Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation

X Ibarra-Soria, W Jawaid, B Pijuan-Sala… - Nature cell …, 2018 - nature.com
During gastrulation, cell types from all three germ layers are specified and the basic body
plan is established. However, molecular analysis of this key developmental stage has been …

Resolving early mesoderm diversification through single-cell expression profiling

A Scialdone, Y Tanaka, W Jawaid, V Moignard… - Nature, 2016 - nature.com
In mammals, specification of the three major germ layers occurs during gastrulation, when
cells ingressing through the primitive streak differentiate into the precursor cells of major …

A single-cell molecular map of mouse gastrulation and early organogenesis

B Pijuan-Sala, JA Griffiths, C Guibentif, TW Hiscock… - Nature, 2019 - nature.com
Across the animal kingdom, gastrulation represents a key developmental event during which
embryonic pluripotent cells diversify into lineage-specific precursors that will generate the …

Decoding the regulatory network of early blood development from single-cell gene expression measurements

V Moignard, S Woodhouse, L Haghverdi, AJ Lilly… - Nature …, 2015 - nature.com
Reconstruction of the molecular pathways controlling organ development has been
hampered by a lack of methods to resolve embryonic progenitor cells. Here we describe a …

Molecular recording of mammalian embryogenesis

MM Chan, ZD Smith, S Grosswendt, H Kretzmer… - Nature, 2019 - nature.com
Ontogeny describes the emergence of complex multicellular organisms from single
totipotent cells. This field is particularly challenging in mammals, owing to the indeterminate …

The single-cell transcriptional landscape of mammalian organogenesis

J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim… - Nature, 2019 - nature.com
Mammalian organogenesis is a remarkable process. Within a short timeframe, the cells of
the three germ layers transform into an embryo that includes most of the major internal and …

A single-cell transcriptome atlas profiles early organogenesis in human embryos

Y Xu, T Zhang, Q Zhou, M Hu, Y Qi, Y Xue, Y Nie… - Nature cell …, 2023 - nature.com
The early window of human embryogenesis is largely a black box for developmental
biologists. Here we probed the cellular diversity of 4–6 week human embryos when …

Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification

S Reischauer, OA Stone, A Villasenor, N Chi, SW Jin… - Nature, 2016 - nature.com
Vascular and haematopoietic cells organize into specialized tissues during early
embryogenesis to supply essential nutrients to all organs and thus play critical roles in …

Tracking early mammalian organogenesis–prediction and validation of differentiation trajectories at whole organism scale

I Imaz-Rosshandler, C Rode, C Guibentif… - …, 2024 - journals.biologists.com
Early organogenesis represents a key step in animal development, during which pluripotent
cells diversify to initiate organ formation. Here, we sampled 300,000 single-cell …

A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

P He, K Lim, D Sun, JP Pett, Q Jeng, K Polanski… - Cell, 2022 - cell.com
We present a multiomic cell atlas of human lung development that combines single-cell RNA
and ATAC sequencing, high-throughput spatial transcriptomics, and single-cell imaging …