Regulatory dynamics of synthetic gene networks with positive feedback

YT Maeda, M Sano - Journal of molecular biology, 2006 - Elsevier
Biological processes are governed by complex networks ranging from gene regulation to
signal transduction. Positive feedback is a key element in such networks. The regulation …

[HTML][HTML] Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion

A Becskei, B Séraphin, L Serrano - The EMBO journal, 2001 - embopress.org
Feedback is a ubiquitous control mechanism of gene networks. Here, we have used positive
feedback to construct a synthetic eukaryotic gene switch in Saccharomyces cerevisiae …

Positive autoregulation shapes response timing and intensity in two-component signal transduction systems

AY Mitrophanov, TJ Hadley, EA Groisman - Journal of molecular biology, 2010 - Elsevier
Positive feedback loops are regulatory elements that can modulate expression output,
kinetics and noise in genetic circuits. Transcriptional regulators participating in such loops …

Interlinking positive and negative feedback loops creates a tunable motif in gene regulatory networks

XJ Tian, XP Zhang, F Liu, W Wang - … Review E—Statistical, Nonlinear, and Soft …, 2009 - APS
Positive and negative feedback loops are often coupled to perform various functions in gene
regulatory networks, acting as bistable switches, oscillators, and excitable devices. It is …

Negative autoregulation speeds the response times of transcription networks

N Rosenfeld, MB Elowitz, U Alon - Journal of molecular biology, 2002 - Elsevier
Cells regulate gene expression using networks of transcription interactions; it is of interest to
discover the principles that govern the dynamical behavior of such networks. An important …

Biochemical oscillations in delayed negative cyclic feedback: Existence and profiles

Y Hori, M Takada, S Hara - Automatica, 2013 - Elsevier
In this paper, we propose a theoretical framework to systematically analyze the existence
and the profiles of chemical oscillations in gene regulatory networks with negative cyclic …

Relaxation rates of gene expression kinetics reveal the feedback signs of autoregulatory gene networks

C Jia, H Qian, M Chen, MQ Zhang - The journal of Chemical physics, 2018 - pubs.aip.org
The transient response to a stimulus and subsequent recovery to a steady state are the
fundamental characteristics of a living organism. Here we study the relaxation kinetics of …

Oscillation patterns in negative feedback loops

S Pigolotti, S Krishna… - Proceedings of the …, 2007 - National Acad Sciences
Organisms are equipped with regulatory systems that display a variety of dynamical
behavior ranging from simple stable steady states, to switching and multistability, to …

Building biological memory by linking positive feedback loops

DE Chang, S Leung, MR Atkinson… - Proceedings of the …, 2010 - National Acad Sciences
A common topology found in many bistable genetic systems is two interacting positive
feedback loops. Here we explore how this relatively simple topology can allow bistability …

Repressilators and promotilators: Loop dynamics in synthetic gene networks

H El Samad, D Del Vecchio… - Proceedings of the 2005 …, 2005 - ieeexplore.ieee.org
Oscillators and switches are ubiquitous in gene regulatory networks. Understanding the
dynamical properties of these systems is a necessity not only to reverse engineer their …