[HTML][HTML] A comprehensive workflow for read depth-based identification of copy-number variation from whole-genome sequence data

B Trost, S Walker, Z Wang… - The American Journal of …, 2018 - cell.com
A remaining hurdle to whole-genome sequencing (WGS) becoming a first-tier genetic test
has been accurate detection of copy-number variations (CNVs). Here, we used several …

Detection of clinically relevant copy number variants with whole‐exome sequencing

J de Ligt, PM Boone, R Pfundt, LELM Vissers… - Human …, 2013 - Wiley Online Library
Copy number variation (CNV) is a common source of genetic variation that has been
implicated in many genomic disorders. This has resulted in the widespread application of …

Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth

M Fromer, JL Moran, K Chambert, E Banks… - The American Journal of …, 2012 - cell.com
Sequencing of gene-coding regions (the exome) is increasingly used for studying human
disease, for which copy-number variants (CNVs) are a critical genetic component. However …

A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

M Gabrielaite, MH Torp, MS Rasmussen… - Cancers, 2021 - mdpi.com
Simple Summary Copy-number variations (CNVs) have important clinical implications for
several diseases and cancers. We reviewed 50 popular CNV calling tools and included 11 …

Exome sequencing and whole genome sequencing for the detection of copy number variation

JY Hehir-Kwa, R Pfundt, JA Veltman - Expert review of molecular …, 2015 - Taylor & Francis
Many laboratories now use genomic microarrays as their first-tier diagnostic test for copy
number variation (CNV) detection. In addition, whole exome sequencing is increasingly …

Identification of novel candidate disease genes from de novo exonic copy number variants

T Gambin, B Yuan, W Bi, P Liu, JA Rosenfeld… - Genome medicine, 2017 - Springer
Background Exon-targeted microarrays can detect small (< 1000 bp) intragenic copy
number variants (CNVs), including those that affect only a single exon. This genome-wide …

Sensitive and accurate detection of copy number variants using read depth of coverage

S Yoon, Z Xuan, V Makarov, K Ye, J Sebat - Genome research, 2009 - genome.cshlp.org
Methods for the direct detection of copy number variation (CNV) genome-wide have become
effective instruments for identifying genetic risk factors for disease. The application of next …

[HTML][HTML] Copy-number variants in clinical genome sequencing: deployment and interpretation for rare and undiagnosed disease

AM Gross, SS Ajay, V Rajan, C Brown, K Bluske… - Genetics in …, 2019 - Elsevier
Purpose Current diagnostic testing for genetic disorders involves serial use of specialized
assays spanning multiple technologies. In principle, genome sequencing (GS) can detect all …

High-resolution mapping and analysis of copy number variations in the human genome: a data resource for clinical and research applications

TH Shaikh, X Gai, JC Perin, JT Glessner, H Xie… - Genome …, 2009 - genome.cshlp.org
We present a database of copy number variations (CNVs) detected in 2026 disease-free
individuals, using high-density, SNP-based oligonucleotide microarrays. This large cohort …

CNV detection from exome sequencing data in routine diagnostics of rare genetic disorders: opportunities and limitations

B Royer-Bertrand, K Cisarova, F Niel-Butschi… - Genes, 2021 - mdpi.com
To assess the potential of detecting copy number variations (CNVs) directly from exome
sequencing (ES) data in diagnostic settings, we developed a CNV-detection pipeline based …