[HTML][HTML] Quantum chemistry-augmented neural networks for reactivity prediction: Performance, generalizability, and explainability

T Stuyver, CW Coley - The Journal of Chemical Physics, 2022 - pubs.aip.org
There is a perceived dichotomy between structure-based and descriptor-based molecular
representations used for predictive chemistry tasks. Here, we study the performance …

Quantum mechanics and machine learning synergies: graph attention neural networks to predict chemical reactivity

M Tavakoli, A Mood, D Van Vranken… - Journal of Chemical …, 2022 - ACS Publications
There is a lack of scalable quantitative measures of reactivity that cover the full range of
functional groups in organic chemistry, ranging from highly unreactive C–C bonds to highly …

When Do Quantum Mechanical Descriptors Help Graph Neural Networks to Predict Chemical Properties?

SC Li, H Wu, A Menon, KA Spiekermann… - Journal of the …, 2024 - ACS Publications
Deep graph neural networks are extensively utilized to predict chemical reactivity and
molecular properties. However, because of the complexity of chemical space, such models …

Importance of engineered and learned molecular representations in predicting organic reactivity, selectivity, and chemical properties

LC Gallegos, G Luchini, PC St. John… - Accounts of Chemical …, 2021 - ACS Publications
Conspectus Machine-readable chemical structure representations are foundational in all
attempts to harness machine learning for the prediction of reactivities, selectivities, and …

Synergies between quantum mechanics and machine learning in reaction prediction

P Sadowski, D Fooshee… - Journal of chemical …, 2016 - ACS Publications
Machine learning (ML) and quantum mechanical (QM) methods can be used in two-way
synergy to build chemical reaction expert systems. The proposed ML approach identifies …

A generalized-template-based graph neural network for accurate organic reactivity prediction

S Chen, Y Jung - Nature Machine Intelligence, 2022 - nature.com
The reliable prediction of chemical reactivity remains in the realm of knowledgeable
synthetic chemists. Automating this process by using artificial intelligence could accelerate …

What does the machine learn? Knowledge representations of chemical reactivity

JA Kammeraad, J Goetz, EA Walker… - Journal of chemical …, 2020 - ACS Publications
In a departure from conventional chemical approaches, data-driven models of chemical
reactions have recently been shown to be statistically successful using machine learning …

Machine learning of reaction properties via learned representations of the condensed graph of reaction

E Heid, WH Green - Journal of Chemical Information and …, 2021 - ACS Publications
The estimation of chemical reaction properties such as activation energies, rates, or yields is
a central topic of computational chemistry. In contrast to molecular properties, where …

Graph neural networks for learning molecular excitation spectra

K Singh, J Munchmeyer, L Weber… - Journal of Chemical …, 2022 - ACS Publications
Machine learning (ML) approaches have demonstrated the ability to predict molecular
spectra at a fraction of the computational cost of traditional theoretical chemistry methods …

Physics-based representations for machine learning properties of chemical reactions

P van Gerwen, A Fabrizio, MD Wodrich… - Machine Learning …, 2022 - iopscience.iop.org
Physics-based representations constructed using only atomic positions and nuclear charges
(also known as quantum machine learning, QML) allow for the reliable and efficient …