Validation of molecular docking programs for virtual screening against dihydropteroate synthase

KE Hevener, W Zhao, DM Ball… - Journal of chemical …, 2009 - ACS Publications
Dihydropteroate synthase (DHPS) is the target of the sulfonamide class of antibiotics and
has been a validated antibacterial drug target for nearly 70 years. The sulfonamides target …

Structural studies of pterin-based inhibitors of dihydropteroate synthase

KE Hevener, MK Yun, J Qi, ID Kerr… - Journal of medicinal …, 2010 - ACS Publications
Dihydropteroate synthase (DHPS) is a key enzyme in bacterial folate synthesis and the
target of the sulfonamide class of antibacterials. Resistance and toxicities associated with …

Molecular docking and simulation study for synthesis of alternative dapsone derivative as a newer antileprosy drug in multidrug therapy

SS Swain, SK Paidesetty, B Dehury… - Journal of cellular …, 2018 - Wiley Online Library
Leprosy (causative, Mycobacterium leprae) continues to be the persisting public health
problem with stable incidence rates, owing to the emergence of dapsone resistance that …

Validation studies of the site-directed docking program LibDock

SN Rao, MS Head, A Kulkarni… - Journal of chemical …, 2007 - ACS Publications
The performance of the site-features docking algorithm LibDock has been evaluated across
eight GlaxoSmithKline targets as a follow-up to a broad validation study of docking and …

Identification of hydantoin based Decaprenylphosphoryl-β-d-Ribose Oxidase (DprE1) inhibitors as antimycobacterial agents using computational tools

SN Mali, A Pandey, RR Bhandare, AB Shaik - Scientific reports, 2022 - nature.com
Tuberculosis (TB) is one of the emerging infectious diseases in the world. DprE1 (
Decaprenylphosphoryl-β-d-ribose 2′-epimerase), an enzyme accountable for …

Docking performance of the glide program as evaluated on the Astex and DUD datasets: a complete set of glide SP results and selected results for a new scoring …

MP Repasky, RB Murphy, JL Banks… - Journal of computer …, 2012 - Springer
Glide SP mode enrichment results for two preparations of the DUD dataset and native ligand
docking RMSDs for two preparations of the Astex dataset are presented. Following a best …

Crystal structure of 7, 8-dihydropteroate synthase from Bacillus anthracis: mechanism and novel inhibitor design

K Babaoglu, J Qi, RE Lee, SW White - Structure, 2004 - cell.com
Dihydropterate synthase (DHPS) is the target for the sulfonamide class of antibiotics, but
increasing resistance has encouraged the development of new therapeutic agents against …

Catalytic site prediction and virtual screening of cytochrome P450 2D6 substrates by consideration of water and rescoring in automated docking

C De Graaf, C Oostenbrink, PHJ Keizers… - Journal of medicinal …, 2006 - ACS Publications
Automated docking strategies successfully applied to binding mode predictions of ligands in
Cyt P450 crystal structures in an earlier study (de Graaf et al. J. Med. Chem. 2005, 7, 2308 …

Benchmark of four popular virtual screening programs: construction of the active/decoy dataset remains a major determinant of measured performance

L Chaput, J Martinez-Sanz, N Saettel… - Journal of …, 2016 - Springer
Background In a structure-based virtual screening, the choice of the docking program is
essential for the success of a hit identification. Benchmarks are meant to help in guiding this …

FRED pose prediction and virtual screening accuracy

M McGann - Journal of chemical information and modeling, 2011 - ACS Publications
Results of a previous docking study are reanalyzed and extended to include results from the
docking program FRED and a detailed statistical analysis of both structure reproduction and …