[PDF][PDF] Transcriptome encyclopedia of early human development

A Sahakyan, K Plath - Cell, 2016 - cell.com
Our understanding of human pre-implantation development is limited by the availability of
human embryos and cannot completely rely on mouse studies. Petropoulos et al. now …

Highly multiplexed spatially resolved gene expression profiling of mouse organogenesis

T Lohoff, S Ghazanfar, A Missarova, N Koulena… - BioRxiv, 2020 - biorxiv.org
Transcriptional and epigenetic profiling of single-cells has advanced our knowledge of the
molecular bases of gastrulation and early organogenesis. However, current approaches rely …

[PDF][PDF] Instructions for assembling the early mammalian embryo

MD White, J Zenker, S Bissiere, N Plachta - Developmental cell, 2018 - cell.com
The preimplantation mouse embryo is a simple self-contained system, making it an excellent
model to discover how mammalian cells function in real time and in vivo. Work over the last …

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

Z Xue, K Huang, C Cai, L Cai, C Jiang, Y Feng, Z Liu… - Nature, 2013 - nature.com
Mammalian pre-implantation development is a complex process involving dramatic changes
in the transcriptional architecture,,,. We report here a comprehensive analysis of …

[HTML][HTML] A differentiation roadmap of murine placentation at single-cell resolution

X Jiang, Y Wang, Z Xiao, L Yan, S Guo, Y Wang, H Wu… - Cell Discovery, 2023 - nature.com
The placenta is one of the most important yet least understood organs. Due to the limitations
of conventional research approaches, we are still far from a comprehensive understanding …

Taiji: System-level identification of key transcription factors reveals transcriptional waves in mouse embryonic development

K Zhang, M Wang, Y Zhao, W Wang - Science Advances, 2019 - science.org
Transcriptional regulation is pivotal to the specification of distinct cell types during embryonic
development. However, it still lacks a systematic way to identify key transcription factors …

An atlas of rabbit development as a model for single-cell comparative genomics

MLN Ton, D Keitley, B Theeuwes, C Guibentif… - Nature Cell …, 2023 - nature.com
Traditionally, the mouse has been the favoured vertebrate model for biomedical research,
due to its experimental and genetic tractability. However, non-rodent embryological studies …

Decoding gene regulation in the mouse embryo using single-cell multi-omics

R Argelaguet, T Lohoff, JG Li, A Nakhuda, D Drage… - BioRxiv, 2022 - biorxiv.org
Following gastrulation, the three primary germ layers develop into the major organs in a
process known as organogenesis. Single-cell RNA sequencing has enabled the profiling of …

The single-cell transcriptional landscape of mammalian organogenesis

J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim… - Nature, 2019 - nature.com
Mammalian organogenesis is a remarkable process. Within a short timeframe, the cells of
the three germ layers transform into an embryo that includes most of the major internal and …

[HTML][HTML] Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis

A Sampath Kumar, L Tian, A Bolondi, AA Hernández… - Nature Genetics, 2023 - nature.com
Spatiotemporal orchestration of gene expression is required for proper embryonic
development. The use of single-cell technologies has begun to provide improved resolution …