A socio-technical approach to trustworthy semantic biomedical content generation and sharing

A Abbas, T Hameed, F Keshtkar, S Kadry… - Information …, 2024 - Elsevier
The rapid growth of online biomedical content has presented a notable challenge in
delivering timely and precise semantic annotations. Semantic annotations play a crucial role …

Proficient Annotation Recommendation in a Biomedical Content Authoring Environment

A Abbas, S Mbouadeu, A Bisram, N Iqbal… - … Knowledge Graphs and …, 2022 - Springer
Given the ubiquity of unstructured biomedical data, significant obstacles still remain in
achieving accurate and fast access to online biomedical content. Accompanying semantic …

Enhancing Biomedical Semantic Annotations through a Knowledge Graph-Based Approach

A Abbas, M Khalid, S Chalarca, F Keshtkar… - The International …, 2023 - par.nsf.gov
An abundance of biomedical data is generated in the form of clinical notes, reports, and
research articles available online. This data holds valuable information that requires …

Towards structured biomedical content authoring and publishing

SF Mbouadeu, A Abbas, F Ahmed… - 2022 IEEE 16th …, 2022 - ieeexplore.ieee.org
Significant barriers exist in achieving fast and accurate access to online biomedical content
because of the proliferation of unstructured biomedical information. Accompanying semantic …

[PDF][PDF] Developing an Application Ontology for Biomedical Resource Annotation and Retrieval: Challenges and Lessons Learned.

C Torniai, MH Brush, NA Vasilevsky, E Segerdell… - ICBO, 2011 - researchgate.net
The eagle-i project has been developing a semantic search portal for biomedical research
resources. A unique feature of eagle-i is that the data collection and search tools are …

Knowledge management in biomedical libraries: A semantic web approach

D Fuentes-Lorenzo, J Morato, JM Gómez - Information Systems Frontiers, 2009 - Springer
In recent years, technological advances in high-throughput techniques and efficient data
gathering methods, coupled with a world-wide effort in computational biology, have resulted …

Semantic annotation in biomedicine: the current landscape

J Jovanović, E Bagheri - Journal of biomedical semantics, 2017 - Springer
The abundance and unstructured nature of biomedical texts, be it clinical or research
content, impose significant challenges for the effective and efficient use of information and …

[HTML][HTML] Semantator: Semantic annotator for converting biomedical text to linked data

C Tao, D Song, D Sharma, CG Chute - Journal of biomedical informatics, 2013 - Elsevier
More than 80% of biomedical data is embedded in plain text. The unstructured nature of
these text-based documents makes it challenging to easily browse and query the data of …

Semantic biomedical resource discovery: a Natural Language Processing framework

P Sfakianaki, L Koumakis, S Sfakianakis… - BMC medical informatics …, 2015 - Springer
Background A plethora of publicly available biomedical resources do currently exist and are
constantly increasing at a fast rate. In parallel, specialized repositories are been developed …

OILing the way to machine understandable bioinformatics resources

R Stevens, C Goble, I Horrocks… - IEEE Transactions on …, 2002 - ieeexplore.ieee.org
The complex questions and analyses posed by biologists, as well as the diverse data
resources they develop, require the fusion of evidence from different, independently …