The field of machine learning for drug discovery is witnessing an explosion of novel methods. These methods are often benchmarked on simple physicochemical properties …
CJ Morris, JA Stern, B Stark… - Journal of Chemical …, 2022 - ACS Publications
Molecular docking tools are regularly used to computationally identify new molecules in virtual screening for drug discovery. However, docking tools suffer from inaccurate scoring …
Molecular docking remains an important tool for structure-based screening to find new ligands and chemical probes. As docking ambitions grow to include new scoring function …
JJ Irwin, BK Shoichet, MM Mysinger… - Journal of medicinal …, 2009 - ACS Publications
Molecular docking is the most practical approach to leverage protein structure for ligand discovery, but the technique retains important liabilities that make it challenging to deploy on …
H Li, KH Sze, G Lu, PJ Ballester - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Molecular docking predicts whether and how small molecules bind to a macromolecular target using a suitable 3D structure. Scoring functions for structure‐based virtual screening …
IS Knight, O Mailhot, KG Tang… - Journal of Chemical …, 2024 - ACS Publications
Molecular docking is a widely used technique for leveraging protein structure for ligand discovery, but it remains difficult to utilize due to limitations that have not been adequately …
MM Mysinger, BK Shoichet - Journal of chemical information and …, 2010 - ACS Publications
In structure-based screens for new ligands, a molecular docking algorithm must rapidly score many molecules in multiple configurations, accounting for both the ligand's …
Structure-based virtual screening relies on scoring the predicted binding modes of compounds docked into the target. Because the accuracy of this scoring relies on the …
WP Feinstein, M Brylinski - Journal of cheminformatics, 2015 - Springer
Background Computational approaches have emerged as an instrumental methodology in modern research. For example, virtual screening by molecular docking is routinely used in …