[HTML][HTML] Extensive deep neural networks for transferring small scale learning to large scale systems

K Mills, K Ryczko, I Luchak, A Domurad, C Beeler… - Chemical …, 2019 - pubs.rsc.org
We present a physically-motivated topology of a deep neural network that can efficiently
infer extensive parameters (such as energy, entropy, or number of particles) of arbitrarily …

Sampling-free inference for ab-initio potential energy surface networks

N Gao, S Günnemann - arXiv preprint arXiv:2205.14962, 2022 - arxiv.org
Recently, it has been shown that neural networks not only approximate the ground-state
wave functions of a single molecular system well but can also generalize to multiple …

Transfer learning for atomistic simulations using GNNs and kernel mean embeddings

J Falk, L Bonati, P Novelli… - Advances in Neural …, 2024 - proceedings.neurips.cc
Interatomic potentials learned using machine learning methods have been successfully
applied to atomistic simulations. However, accurate models require large training datasets …

FINETUNA: fine-tuning accelerated molecular simulations

J Musielewicz, X Wang, T Tian… - … Learning: Science and …, 2022 - iopscience.iop.org
Progress towards the energy breakthroughs needed to combat climate change can be
significantly accelerated through the efficient simulation of atomistic systems. However …

[HTML][HTML] Neural scaling of deep chemical models

NC Frey, R Soklaski, S Axelrod, S Samsi… - Nature Machine …, 2023 - nature.com
Massive scale, in terms of both data availability and computation, enables important
breakthroughs in key application areas of deep learning such as natural language …

Scalable Parallel Algorithm for Graph Neural Network Interatomic Potentials in Molecular Dynamics Simulations

Y Park, J Kim, S Hwang, S Han - Journal of Chemical Theory and …, 2024 - ACS Publications
Message-passing graph neural network interatomic potentials (GNN-IPs), particularly those
with equivariant representations such as NequIP, are attracting significant attention due to …

Training atomic neural networks using fragment-based data generated in virtual reality

S Amabilino, LA Bratholm, SJ Bennie… - The Journal of …, 2020 - pubs.aip.org
The ability to understand and engineer molecular structures relies on having accurate
descriptions of the energy as a function of atomic coordinates. Here, we outline a new …

Schnet–a deep learning architecture for molecules and materials

KT Schütt, HE Sauceda, PJ Kindermans… - The Journal of …, 2018 - pubs.aip.org
Deep learning has led to a paradigm shift in artificial intelligence, including web, text, and
image search, speech recognition, as well as bioinformatics, with growing impact in …

[HTML][HTML] Learning neural network potentials from experimental data via Differentiable Trajectory Reweighting

S Thaler, J Zavadlav - Nature communications, 2021 - nature.com
In molecular dynamics (MD), neural network (NN) potentials trained bottom-up on quantum
mechanical data have seen tremendous success recently. Top-down approaches that learn …

Coarse-graining with equivariant neural networks: A path toward accurate and data-efficient models

TD Loose, PG Sahrmann, TS Qu… - The Journal of Physical …, 2023 - ACS Publications
Machine learning has recently entered into the mainstream of coarse-grained (CG)
molecular modeling and simulation. While a variety of methods for incorporating deep …