A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit

H Xiao, N Jiang, E Schaffner, EJ Stockinger… - science, 2008 - science.org
Edible fruits, such as that of the tomato plant and other vegetable crops, are markedly
diverse in shape and size. SUN, one of the major genes controlling the elongated fruit shape …

The Origins of Genomic Duplications in Arabidopsis

TJ Vision, DG Brown, SD Tanksley - Science, 2000 - science.org
Large segmental duplications cover much of the Arabidopsis thaliana genome. Little is
known about their origins. We show that they are primarily due to at least four different large …

[HTML][HTML] A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour

L Zhang, J Hu, X Han, J Li, Y Gao, CM Richards… - Nature …, 2019 - nature.com
A complete and accurate genome sequence provides a fundamental tool for functional
genomics and DNA-informed breeding. Here, we assemble a high-quality genome (contig …

Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes

KY Chen, B Cong, R Wing, J Vrebalov, SD Tanksley - Science, 2007 - science.org
We report the cloning of Style2. 1, the major quantitative trait locus responsible for a key
floral attribute (style length) associated with the evolution of self-pollination in cultivated …

A Gene Expression Map of the Arabidopsis Root

K Birnbaum, DE Shasha, JY Wang, JW Jung… - Science, 2003 - science.org
A global map of gene expression within an organ can identify genes with coordinated
expression in localized domains, thereby relating gene activity to cell fate and tissue …

Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato

S Soyk, NA Müller, SJ Park, I Schmalenbach, K Jiang… - Nature Genetics, 2017 - nature.com
Plants evolved so that their flowering is triggered by seasonal changes in day length.
However, day-length sensitivity in crops limits their geographical range of cultivation, and …

The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor

L Gao, I Gonda, H Sun, Q Ma, K Bao, DM Tieman… - Nature …, 2019 - nature.com
Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …

Zooming in on a quantitative trait for tomato yield using interspecific introgressions

E Fridman, F Carrari, YS Liu, AR Fernie, D Zamir - Science, 2004 - science.org
To explore natural biodiversity we developed and examined introgression lines (ILs)
containing chromosome segments of wild species (Solanum pennellii) in the background of …

Developmental changes due to long-distance movement of a homeobox fusion transcript in tomato

M Kim, W Canio, S Kessler, N Sinha - Science, 2001 - science.org
Long-distance movement of RNA through the phloem is known to occur, but the functional
importance of these transported RNAs has remained unclear. Grafting experiments with a …

[HTML][HTML] High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

N Daccord, JM Celton, G Linsmith, C Becker… - Nature …, 2017 - nature.com
Using the latest sequencing and optical mapping technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …