Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer

S Kai, Y Matsuo, S Nakagawa, K Kryukov… - FEBS open …, 2019 - Wiley Online Library
Rapid identification of bacterial pathogens is crucial for appropriate and adequate antibiotic
treatment, which significantly improves patient outcomes. 16S ribosomal RNA (rRNA) gene …

Next-generation sequencing of infectious pathogens

M Gwinn, D MacCannell, GL Armstrong - Jama, 2019 - jamanetwork.com
Next-generation sequencing holds potential for improving clinical and public health
microbiology. 1 In addition to identifying pathogens more rapidly and precisely than …

Comprehensive genomic and plasmid characterization of multidrug-resistant bacterial strains by R10. 4.1 nanopore sequencing

L Ye, X Liu, Y Ni, Y Xu, Z Zheng, K Chen, Q Hu… - Microbiological …, 2024 - Elsevier
The escalating prevalence of multidrug-resistant (MDR) bacteria pose a significant public
health threat. Understanding the genomic features and deciphering the antibiotic resistance …

[HTML][HTML] Comparison of illumina and Oxford nanopore sequencing technologies for pathogen detection from clinical matrices using molecular inversion probes

CP Stefan, AT Hall, AS Graham, TD Minogue - The Journal of Molecular …, 2022 - Elsevier
Next-generation sequencing is rapidly finding footholds in numerous microbiological fields,
including infectious disease diagnostics. Here, we describe a molecular inversion probe …

[HTML][HTML] Detection of viral pathogens with multiplex nanopore MinION sequencing: be careful with cross-talk

Y Xu, K Lewandowski, S Lumley, S Pullan… - Frontiers in …, 2018 - frontiersin.org
Metagenomic sequencing with the Oxford Nanopore MinION sequencer offers potential for
point-of-care testing of infectious diseases in clinical settings. To improve cost-effectiveness …

Rapid identification of pathogens from positive blood culture bottles with the MinION nanopore sequencer

S Ashikawa, N Tarumoto, K Imai… - Journal of Medical …, 2018 - microbiologyresearch.org
Purpose. Bloodstream infections are major causes of morbidity and mortality that lead to
prolonged hospital stays and higher medical costs. In this study, we aimed to evaluate the …

A prospective study of nanopore-targeted sequencing in the diagnosis of central nervous system infections

Y Fu, J Gu, LJ Chen, M Xiong, J Zhao, X Xiao… - Microbiology …, 2024 - Am Soc Microbiol
Central nervous system (CNS) infections are a leading cause of death in patients. Nanopore-
targeted sequencing (NTS) has begun to be used for pathogenic microbial detection. This …

Recent and emerging technologies for the rapid diagnosis of infection and antimicrobial resistance

AJ Trotter, A Aydin, MJ Strinden, J O'grady - Current opinion in …, 2019 - Elsevier
Highlights•Rapid diagnostics are essential in the fight against antimicrobial
resistance.•BioFire® FilmArray® panels can identify pathogen resistance genes in 1 …

Nanopore sequencing technology and Internet of living things: A big hope for U-healthcare

K Raza, S Qazi - Sensors for health monitoring, 2019 - Elsevier
The convergence of several technologies such as ultrafast nanopore sequencing,
biosensors, the Internet of things (IoT), cloud computing, computational intelligence …

Enrichment by hybridisation of long DNA fragments for Nanopore sequencing

SE Eckert, JZM Chan, D Houniet… - Microbial …, 2016 - microbiologyresearch.org
Enrichment of DNA by hybridisation is an important tool which enables users to gather target-
focused next-generation sequence data in an economical fashion. Current in-solution …