Lineage Landscape: a comprehensive database that records lineage commitment across species

H Yan, R Wang, S Ma, D Huang, S Wang… - Nucleic Acids …, 2023 - academic.oup.com
Commitment to specific cell lineages is critical for mammalian embryonic development.
Lineage determination, differentiation, maintenance, and organogenesis result in diverse life …

Tracing human stem cell lineage during development using DNA methylation

LA Salas, JK Wiencke, DC Koestler, Z Zhang… - Genome …, 2018 - genome.cshlp.org
Stem cell maturation is a fundamental, yet poorly understood aspect of human development.
We devised a DNA methylation signature deeply reminiscent of embryonic stem cells (a fetal …

A generic, cost-effective, and scalable cell lineage analysis platform

T Biezuner, A Spiro, O Raz, S Amir, L Milo… - Genome …, 2016 - genome.cshlp.org
Advances in single-cell genomics enable commensurate improvements in methods for
uncovering lineage relations among individual cells. Current sequencing-based methods for …

[HTML][HTML] Quantitative fate mapping: A general framework for analyzing progenitor state dynamics via retrospective lineage barcoding

W Fang, CM Bell, A Sapirstein, S Asami, K Leeper… - Cell, 2022 - cell.com
Natural and induced somatic mutations that accumulate in the genome during development
record the phylogenetic relationships of cells; whether these lineage barcodes capture the …

Cell lineage tracing and cellular diversity in humans

A Abyzov, FM Vaccarino - Annual Review of Genomics and …, 2020 - annualreviews.org
Tracing cell lineages is fundamental for understanding the rules governing development in
multicellular organisms and delineating complex biological processes involving the …

Dynamic epigenomic landscapes during early lineage specification in mouse embryos

Y Zhang, Y Xiang, Q Yin, Z Du, X Peng, Q Wang… - Nature …, 2018 - nature.com
In mammals, all somatic development originates from lineage segregation in early embryos.
However, the dynamics of transcriptomes and epigenomes acting in concert with initial cell …

Next-generation lineage tracing and fate mapping to interrogate development

S VanHorn, SA Morris - Developmental cell, 2021 - cell.com
Lineage tracing and fate mapping, overlapping yet distinct disciplines to follow cells and
their progeny, have evolved rapidly over the last century. Lineage tracing aims to identify all …

An atlas of dynamic chromatin landscapes in mouse fetal development

DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang… - Nature, 2020 - nature.com
Abstract The Encyclopedia of DNA Elements (ENCODE) project has established a genomic
resource for mammalian development, profiling a diverse panel of mouse tissues at 8 …

[HTML][HTML] Genome-wide chromatin state transitions associated with developmental and environmental cues

J Zhu, M Adli, JY Zou, G Verstappen, M Coyne… - Cell, 2013 - cell.com
Differences in chromatin organization are key to the multiplicity of cell states that arise from a
single genetic background, yet the landscapes of in vivo tissues remain largely uncharted …

The Yin and Yang of chromatin dynamics in stem cell fate selection

RC Adam, E Fuchs - Trends in Genetics, 2016 - cell.com
Adult organisms rely on tissue stem cells for maintenance and repair. During homeostasis,
the concerted action of local niche signals and epigenetic regulators establish stable gene …