ReactionPredictor: prediction of complex chemical reactions at the mechanistic level using machine learning

MA Kayala, P Baldi - Journal of chemical information and …, 2012 - ACS Publications
Proposing reasonable mechanisms and predicting the course of chemical reactions is
important to the practice of organic chemistry. Approaches to reaction prediction have …

Learning to predict chemical reactions

MA Kayala, CA Azencott, JH Chen… - Journal of chemical …, 2011 - ACS Publications
Being able to predict the course of arbitrary chemical reactions is essential to the theory and
applications of organic chemistry. Approaches to the reaction prediction problems can be …

No electron left behind: a rule-based expert system to predict chemical reactions and reaction mechanisms

JH Chen, P Baldi - Journal of chemical information and modeling, 2009 - ACS Publications
Predicting the course and major products of arbitrary reactions is a fundamental problem in
chemistry, one that chemists must address in a variety of tasks ranging from synthesis …

Predictive chemistry: machine learning for reaction deployment, reaction development, and reaction discovery

Z Tu, T Stuyver, CW Coley - Chemical science, 2023 - pubs.rsc.org
The field of predictive chemistry relates to the development of models able to describe how
molecules interact and react. It encompasses the long-standing task of computer-aided …

Neural networks for the prediction of organic chemistry reactions

JN Wei, D Duvenaud, A Aspuru-Guzik - ACS central science, 2016 - ACS Publications
Reaction prediction remains one of the major challenges for organic chemistry and is a
prerequisite for efficient synthetic planning. It is desirable to develop algorithms that, like …

Prediction of organic reaction outcomes using machine learning

CW Coley, R Barzilay, TS Jaakkola, WH Green… - ACS central …, 2017 - ACS Publications
Computer assistance in synthesis design has existed for over 40 years, yet retrosynthesis
planning software has struggled to achieve widespread adoption. One critical challenge in …

Deep learning for chemical reaction prediction

D Fooshee, A Mood, E Gutman, M Tavakoli… - … Systems Design & …, 2018 - pubs.rsc.org
Reaction predictor is an application for predicting chemical reactions and reaction pathways.
It uses deep learning to predict and rank elementary reactions by first identifying electron …

Synergies between quantum mechanics and machine learning in reaction prediction

P Sadowski, D Fooshee… - Journal of chemical …, 2016 - ACS Publications
Machine learning (ML) and quantum mechanical (QM) methods can be used in two-way
synergy to build chemical reaction expert systems. The proposed ML approach identifies …

A graph-convolutional neural network model for the prediction of chemical reactivity

CW Coley, W Jin, L Rogers, TF Jamison… - Chemical …, 2019 - pubs.rsc.org
We present a supervised learning approach to predict the products of organic reactions
given their reactants, reagents, and solvent (s). The prediction task is factored into two …

Simultaneously improving reaction coverage and computational cost in automated reaction prediction tasks

Q Zhao, BM Savoie - Nature Computational Science, 2021 - nature.com
Automated reaction prediction has the potential to elucidate complex reaction networks for
applications ranging from combustion to materials degradation, but computational cost and …