[HTML][HTML] A comprehensive infrastructure for big data in cancer research: accelerating cancer research and precision medicine

IV Hinkson, TM Davidsen, JD Klemm… - Frontiers in cell and …, 2017 - frontiersin.org
Advancements in next-generation sequencing and other-omics technologies are
accelerating the detailed molecular characterization of individual patient tumors, and driving …

In vivo functional screening for systems-level integrative cancer genomics

J Weber, CJ Braun, D Saur, R Rad - Nature reviews Cancer, 2020 - nature.com
With the genetic portraits of all major human malignancies now available, we next face the
challenge of characterizing the function of mutated genes, their downstream targets …

[HTML][HTML] Decomposing oncogenic transcriptional signatures to generate maps of divergent cellular states

JW Kim, OO Abudayyeh, H Yeerna, CH Yeang… - Cell systems, 2017 - cell.com
The systematic sequencing of the cancer genome has led to the identification of numerous
genetic alterations in cancer. However, a deeper understanding of the functional …

In silico signaling modeling to understand cancer pathways and treatment responses

M Kunz, J Jeromin, M Fuchs, J Christoph… - Briefings in …, 2020 - academic.oup.com
Precision medicine has changed thinking in cancer therapy, highlighting a better
understanding of the individual clinical interventions. But what role do the drivers and …

Introduction: Cancer gene networks

R Clarke - Cancer Gene Networks, 2017 - Springer
Constructing, evaluating, and interpreting gene networks generally sits within the broader
field of systems biology, which continues to emerge rapidly, particular with respect to its …

[图书][B] Cancer systems biology

E Wang - 2010 - books.google.com
The unprecedented amount of data produced with high-throughput experimentation forces
biologists to employ mathematical representation and computation to glean meaningful …

[HTML][HTML] Single-cell transcriptomics in cancer: computational challenges and opportunities

J Fan, K Slowikowski, F Zhang - Experimental & Molecular Medicine, 2020 - nature.com
Intratumor heterogeneity is a common characteristic across diverse cancer types and
presents challenges to current standards of treatment. Advancements in high-throughput …

[HTML][HTML] Development and clinical application of an integrative genomic approach to personalized cancer therapy

AV Uzilov, W Ding, MY Fink, Y Antipin, AS Brohl… - Genome medicine, 2016 - Springer
Background Personalized therapy provides the best outcome of cancer care and its
implementation in the clinic has been greatly facilitated by recent convergence of enormous …

[HTML][HTML] Modeling genetic heterogeneity of drug response and resistance in cancer

TD Laajala, T Gerke, S Tyekucheva… - Current opinion in systems …, 2019 - Elsevier
Heterogeneity in tumors is recognized as a key contributor to drug resistance and spread of
advanced disease, but deep characterization of genetic variation within tumors has only …

Computational methods to dissect gene regulatory networks in cancer

AS Iyer, HU Osmanbeyoglu, CS Leslie - Current opinion in systems biology, 2017 - Elsevier
Cancer is a disease of gene dysregulation, where cells acquire genetic alterations that drive
aberrant signaling. These alterations adversely impact transcriptional programs and cause …