Virtual alignment of pathology image series for multi-gigapixel whole slide images

CD Gatenbee, AM Baker, S Prabhakaran… - Nature …, 2023 - nature.com
Interest in spatial omics is on the rise, but generation of highly multiplexed images remains
challenging, due to cost, expertise, methodical constraints, and access to technology. An …

[HTML][HTML] Whole slide image registration via multi-stained feature matching

MZ Hoque, A Keskinarkaus, P Nyberg, T Mattila… - Computers in Biology …, 2022 - Elsevier
In the recent decade, medical image registration and fusion process has emerged as an
effective application to follow up diseases and decide the necessary therapies based on the …

ANHIR: automatic non-rigid histological image registration challenge

J Borovec, J Kybic, I Arganda-Carreras… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
Automatic Non-rigid Histological Image Registration (ANHIR) challenge was organized to
compare the performance of image registration algorithms on several kinds of microscopy …

[HTML][HTML] Fully automatic and robust 3D registration of serial-section microscopic images

CW Wang, E Budiman Gosno, YS Li - Scientific reports, 2015 - nature.com
Robust and fully automatic 3D registration of serial-section microscopic images is critical for
detailed anatomical reconstruction of large biological specimens, such as reconstructions of …

Benchmarking of image registration methods for differently stained histological slides

J Borovec, A Munoz-Barrutia… - 2018 25th IEEE …, 2018 - ieeexplore.ieee.org
Image registration is a common task for many biomedical analysis applications. The present
work focuses on the benchmarking of registration methods on differently stained histological …

Whole slide imaging (WSI) in pathology: current perspectives and future directions

N Kumar, R Gupta, S Gupta - Journal of digital imaging, 2020 - Springer
Whole slide imaging (WSI), ever since its first introduction about two decades ago, has been
validated for a number of applications in the field of pathology. The recent approval of US …

Robust image registration of biological microscopic images

CW Wang, SM Ka, A Chen - Scientific reports, 2014 - nature.com
Image registration of biological data is challenging as complex deformation problems are
common. Possible deformation effects can be caused in individual data preparation …

TIAToolbox as an end-to-end library for advanced tissue image analytics

J Pocock, S Graham, QD Vu, M Jahanifar… - Communications …, 2022 - nature.com
Background Computational pathology has seen rapid growth in recent years, driven by
advanced deep-learning algorithms. Due to the sheer size and complexity of multi-gigapixel …

[HTML][HTML] 3D reconstruction of multiple stained histology images

Y Song, D Treanor, AJ Bulpitt, DR Magee - Journal of pathology informatics, 2013 - Elsevier
Abstract Context: Three dimensional (3D) tissue reconstructions from the histology images
with different stains allows the spatial alignment of structural and functional elements …

Robust mosaicing with correction of motion distortions and tissue deformations for in vivo fibered microscopy

T Vercauteren, A Perchant, G Malandain, X Pennec… - Medical image …, 2006 - Elsevier
Real-time in vivo and in situ imaging at the cellular level can be achieved with fibered
confocal microscopy. As interesting as dynamic sequences may be, there is a need for the …