Prioritising lexical patterns to increase axiomatisation in biomedical ontologies

M Quesada-Martínez… - … of information in …, 2015 - thieme-connect.com
Introduction: This article is part of the Focus Theme of Methods of Information in Medicine on
“Managing Interoperability and Complexity in Health Systems”. Objectives: In previous work …

Prioritising lexical patterns to increase axiomatisation in biomedical ontologies. The role of localisation and modularity.

M Quesada-Martínez, JT Fernández-Breis… - … of Information in …, 2014 - europepmc.org
This article is part of the Focus Theme of METHODS of Information in Medicine on"
Managing Interoperability and Complexity in Health Systems". In previous work, we have …

Improved characterisation of clinical text through ontology-based vocabulary expansion

LT Slater, W Bradlow, S Ball, R Hoehndorf… - Journal of biomedical …, 2021 - Springer
Background Biomedical ontologies contain a wealth of metadata that constitutes a
fundamental infrastructural resource for text mining. For several reasons, redundancies exist …

Extraction and analysis of the structure of labels in biomedical ontologies

M Quesada-Martínez, JT Fernández-Breis… - Proceedings of the 2nd …, 2012 - dl.acm.org
The increasing interest in biomedical ontologies has provoked the development of a
significant number of ontologies, and many more are expected to be produced in the near …

Lexical characterisation of bio-ontologies by the inspection of regularities in labels

M Quesada-Martínez, JT Fernández-Breis… - Current …, 2015 - ingentaconnect.com
Hundreds of biomedical ontologies have been produced, with many of the significant, widely
used ones being developed in collaborative efforts and following a set of construction …

Approaching the axiomatic enrichment of the Gene Ontology from a lexical perspective

M Quesada-Martínez, E Mikroyannidi… - Artificial intelligence in …, 2015 - Elsevier
Objective The main goal of this work is to measure how lexical regularities in biomedical
ontology labels can be used for the automatic creation of formal relationships between …

Lexical characterization and analysis of the BioPortal ontologies

M Quesada-Martínez, JT Fernández-Breis… - Artificial Intelligence in …, 2013 - Springer
The increasing interest of the biomedical community in ontologies can be exemplified by the
availability of hundreds of biomedical ontologies and controlled vocabularies, and by the …

Combining lexical and context features for automatic ontology extension

S Althubaiti, Ş Kafkas, M Abdelhakim… - Journal of biomedical …, 2020 - Springer
Background Ontologies are widely used across biology and biomedicine for the annotation
of databases. Ontology development is often a manual, time-consuming, and expensive …

Studying the reuse of content in biomedical ontologies: An axiom-based approach

M Quesada-Martínez, JT Fernández-Breis - Artificial Intelligence in …, 2017 - Springer
The biomedical community has developed many ontologies in the last years, which may
follow a set of community accepted principles for ontology development such as the ones …

[PDF][PDF] Enrichment of owl ontologies: a method for defining axioms from labels

M Quesada-Martınez, JT Fernández-Breis… - Proceedings of the First …, 2012 - Citeseer
An increasing interest in biomedical ontologies has provoked the development of a
significant number of ontologies. Many such ontologies have not been created by computer …