NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy

W de Koning, M Miladi, S Hiltemann, A Heikema… - …, 2020 - academic.oup.com
Background Long-read sequencing can be applied to generate very long contigs and even
completely assembled genomes at relatively low cost and with minimal sample preparation …

NanoPack: visualizing and processing long-read sequencing data

W De Coster, S D'hert, DT Schultz, M Cruts… - …, 2018 - academic.oup.com
Here we describe NanoPack, a set of tools developed for visualization and processing of
long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences …

Ultra-long read sequencing for whole genomic DNA analysis

L Gong, CH Wong, J Idol, CY Ngan, CL Wei - JoVE (Journal of Visualized …, 2019 - jove.com
Third generation single-molecule DNA sequencing technologies offer significantly longer
read length that can facilitate the assembly of complex genomes and analysis of complex …

NanoPipe—a web server for nanopore MinION sequencing data analysis

V Shabardina, T Kischka, F Manske… - …, 2019 - academic.oup.com
Background The fast-moving progress of the third-generation long-read sequencing
technologies will soon bring the biological and medical sciences to a new era of research …

Oxford Nanopore MinION sequencing and genome assembly

H Lu, F Giordano, Z Ning - Genomics, Proteomics and …, 2016 - academic.oup.com
The revolution of genome sequencing is continuing after the successful second-generation
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …

NanoSim: nanopore sequence read simulator based on statistical characterization

C Yang, J Chu, RL Warren, I Birol - GigaScience, 2017 - academic.oup.com
Abstract Background The MinION sequencing instrument from Oxford Nanopore
Technologies (ONT) produces long read lengths from single-molecule sequencing–valuable …

NanoR: A user-friendly R package to analyze and compare nanopore sequencing data

D Bolognini, N Bartalucci, A Mingrino, AM Vannucchi… - PloS one, 2019 - journals.plos.org
MinION and GridION X5 from Oxford Nanopore Technologies are devices for real-time DNA
and RNA sequencing. On the one hand, MinION is the only real-time, low cost and portable …

Genome assembly using Nanopore-guided long and error-free DNA reads

MA Madoui, S Engelen, C Cruaud, C Belser, L Bertrand… - BMC genomics, 2015 - Springer
Background Long-read sequencing technologies were launched a few years ago, and in
contrast with short-read sequencing technologies, they offered a promise of solving …

minoTour, real-time monitoring and analysis for nanopore sequencers

R Munro, R Santos, A Payne, T Forey, S Osei… - …, 2022 - academic.oup.com
Abstract Summary minoTour offers a Laboratory Informations Management System (LIMS)
system for Oxford Nanopore Technology sequencers, with real-time metrics and analysis …

Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions

D Senol Cali, JS Kim, S Ghose, C Alkan… - Briefings in …, 2019 - academic.oup.com
Nanopore sequencing technology has the potential to render other sequencing
technologies obsolete with its ability to generate long reads and provide portability …