Bayesian molecular design with a chemical language model

H Ikebata, K Hongo, T Isomura, R Maezono… - Journal of computer …, 2017 - Springer
The aim of computational molecular design is the identification of promising hypothetical
molecules with a predefined set of desired properties. We address the issue of accelerating …

Generative models should at least be able to design molecules that dock well: A new benchmark

T Cieplinski, T Danel, S Podlewska… - Journal of Chemical …, 2023 - ACS Publications
Designing compounds with desired properties is a key element of the drug discovery
process. However, measuring progress in the field has been challenging due to the lack of …

Artificial intelligence in chemistry and drug design

N Brown, P Ertl, R Lewis, T Luksch, D Reker… - Journal of Computer …, 2020 - Springer
The discovery of molecular structures with desired properties for applications in drug
discovery, crop protection, or chemical biology is among the most impactful scientific …

Population-based de novo molecule generation, using grammatical evolution

N Yoshikawa, K Terayama, M Sumita… - Chemistry …, 2018 - academic.oup.com
Automatic molecule design with machine learning and simulations has shown a remarkable
ability to generate new and promising drug candidates. We propose a new population …

Conditional molecular design with deep generative models

S Kang, K Cho - Journal of chemical information and modeling, 2018 - ACS Publications
Although machine learning has been successfully used to propose novel molecules that
satisfy desired properties, it is still challenging to explore a large chemical space efficiently …

Machine learning the ropes: principles, applications and directions in synthetic chemistry

F Strieth-Kalthoff, F Sandfort, MHS Segler… - Chemical Society …, 2020 - pubs.rsc.org
Machine learning (ML) has emerged as a general, problem-solving paradigm with many
applications in computer vision, natural language processing, digital safety, or medicine. By …

Applications of deep learning in molecule generation and molecular property prediction

WP Walters, R Barzilay - Accounts of chemical research, 2020 - ACS Publications
Conspectus Recent advances in computer hardware and software have led to a revolution
in deep neural networks that has impacted fields ranging from language translation to …

Automated de novo molecular design by hybrid machine intelligence and rule-driven chemical synthesis

A Button, D Merk, JA Hiss, G Schneider - Nature machine intelligence, 2019 - nature.com
Chemical creativity in the design of new synthetic chemical entities (NCEs) with drug-like
properties has been the domain of medicinal chemists. Here, we explore the capability of a …

Perplexity-based molecule ranking and bias estimation of chemical language models

M Moret, F Grisoni, P Katzberger… - Journal of chemical …, 2022 - ACS Publications
Chemical language models (CLMs) can be employed to design molecules with desired
properties. CLMs generate new chemical structures in the form of textual representations …

Generating focused molecule libraries for drug discovery with recurrent neural networks

MHS Segler, T Kogej, C Tyrchan… - ACS central science, 2018 - ACS Publications
In de novo drug design, computational strategies are used to generate novel molecules with
good affinity to the desired biological target. In this work, we show that recurrent neural …