Mapping genomic and epigenomic evolution in cancer ecosystems

T Ushijima, SJ Clark, P Tan - Science, 2021 - science.org
Cancer is a major cause of global mortality underpinned by genomic and epigenomic
derangements. Here, we highlight the importance of multimodal data integration in …

Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer

R Chari, KL Thu, IM Wilson, WW Lockwood… - Cancer and Metastasis …, 2010 - Springer
Advances in high-throughput, genome-wide profiling technologies have allowed for an
unprecedented view of the cancer genome landscape. Specifically, high-density microarrays …

Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response

R Arora, C Cao, M Kumar, S Sinha, A Chanda… - Nature …, 2023 - nature.com
The spatial organization of the tumor microenvironment has a profound impact on biology
and therapy response. Here, we perform an integrative single-cell and spatial transcriptomic …

The cancer cell map initiative: defining the hallmark networks of cancer

NJ Krogan, S Lippman, DA Agard, A Ashworth, T Ideker - Molecular cell, 2015 - cell.com
Progress in DNA sequencing has revealed the startling complexity of cancer genomes,
which typically carry thousands of somatic mutations. However, it remains unclear which are …

Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics

AS Nam, R Chaligne, DA Landau - Nature Reviews Genetics, 2021 - nature.com
Cancer represents an evolutionary process through which growing malignant populations
genetically diversify, leading to tumour progression, relapse and resistance to therapy. In …

[HTML][HTML] The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution

O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy… - Cell, 2020 - cell.com
Crucial transitions in cancer—including tumor initiation, local expansion, metastasis, and
therapeutic resistance—involve complex interactions between cells within the dynamic …

Cancer genome landscapes

B Vogelstein, N Papadopoulos, VE Velculescu, S Zhou… - science, 2013 - science.org
Over the past decade, comprehensive sequencing efforts have revealed the genomic
landscapes of common forms of human cancer. For most cancer types, this landscape …

Characterizing the ecological and evolutionary dynamics of cancer

N Zahir, R Sun, D Gallahan, RA Gatenby, C Curtis - Nature genetics, 2020 - nature.com
Tumor initiation and progression are somatic evolutionary processes driven by the
accumulation of genetic alterations, some of which confer selective fitness advantages to the …

Biological and therapeutic impact of intratumor heterogeneity in cancer evolution

N McGranahan, C Swanton - Cancer cell, 2015 - cell.com
Precision medicine requires an understanding of cancer genes and mutational processes,
as well as an appreciation of the extent to which these are found heterogeneously in cancer …

Unraveling the complexity of the cancer microenvironment with multidimensional genomic and cytometric technologies

NL De Vries, A Mahfouz, F Koning… - Frontiers in …, 2020 - frontiersin.org
Cancers are characterized by extensive heterogeneity that occurs intratumorally, between
lesions, and across patients. To study cancer as a complex biological system …