Long-term evolution of SARS-CoV-2 in an immunocompromised patient with non-Hodgkin lymphoma

V Borges, J Isidro, M Cunha, D Cochicho, L Martins… - Msphere, 2021 - Am Soc Microbiol
Recent studies have shown that persistent SARS-CoV-2 infections in immunocompromised
patients can trigger the accumulation of an unusual high number of mutations with potential …

Integrated immune dynamics define correlates of COVID-19 severity and antibody responses

M Koutsakos, LC Rowntree, L Hensen, BY Chua… - Cell Reports …, 2021 - cell.com
SARS-CoV-2 causes a spectrum of COVID-19 disease, the immunological basis of which
remains ill defined. We analyzed 85 SARS-CoV-2-infected individuals at acute and/or …

Incorporating global dynamics to improve the accuracy of disease models: Example of a COVID-19 SIR model

H AlQadi, M Bani-Yaghoub - Plos one, 2022 - journals.plos.org
Mathematical models of infectious diseases exhibit robust dynamics, such as stable
endemic, disease-free equilibriums or convergence of the solutions to periodic epidemic …

[HTML][HTML] Comparing COVID-19 vaccine allocation strategies in India: A mathematical modelling study

BH Foy, B Wahl, K Mehta, A Shet, GI Menon… - International Journal of …, 2021 - Elsevier
Background The development and widespread use of an effective SARS-CoV-2 vaccine
could prevent substantial morbidity and mortality associated with COVID-19 and mitigate the …

Impact of vaccine hesitancy on secondary COVID-19 outbreaks in the US: an age-structured SIR model

A de Miguel-Arribas, A Aleta, Y Moreno - BMC infectious diseases, 2022 - Springer
Background The COVID-19 outbreak has become the worst pandemic in at least a century.
To fight this disease, a global effort led to the development of several vaccines at an …

[HTML][HTML] Preexisting comorbidities shape the immune response associated with severe COVID-19

S Kreutmair, M Kauffmann, S Unger… - Journal of Allergy and …, 2022 - Elsevier
Background Comorbidities are risk factors for development of severe coronavirus disease
2019 (COVID-19). However, the extent to which an underlying comorbidity influences the …

Modeling and simulations of CoViD-19 molecular mechanism induced by cytokines storm during SARS-CoV2 infection

Z Yu, R Ellahi, A Nutini, A Sohail, SM Sait - Journal of molecular liquids, 2021 - Elsevier
It is highly desired to explore the interventions of COVID-19 for early treatment strategies.
Such interventions are still under consideration. A model is benchmarked research and …

Use of machine learning to identify a T cell response to SARS-CoV-2

MS Shoukat, AD Foers, S Woodmansey, SC Evans… - Cell Reports …, 2021 - cell.com
The identification of SARS-CoV-2-specific T cell receptor (TCR) sequences is critical for
understanding T cell responses to SARS-CoV-2. Accordingly, we reanalyze publicly …

A longitudinal study of immune cells in severe COVID-19 patients

D Payen, M Cravat, H Maadadi, C Didelot… - Frontiers in …, 2020 - frontiersin.org
Little is known about the time-dependent immune responses in severe COVID-19. Data of
15 consecutive patients were sequentially recorded from intensive care unit admission …

Infection induced SARS-CoV-2 seroprevalence and heterogeneity of antibody responses in a general population cohort study in Catalonia Spain

M Karachaliou, G Moncunill, A Espinosa… - Scientific reports, 2021 - nature.com
Sparse data exist on the complex natural immunity to SARS-CoV-2 at the population level.
We applied a well-validated multiplex serology test in 5000 participants of a general …