Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets

M Wang, XM Zhao, H Tan, T Akutsu… - …, 2014 - academic.oup.com
Motivation: Caspases and granzyme B (GrB) are important proteases involved in
fundamental cellular processes and play essential roles in programmed cell death, necrosis …

Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features

Y Bao, S Marini, T Tamura, M Kamada… - Briefings in …, 2019 - academic.oup.com
As one of the few irreversible protein posttranslational modifications, proteolytic cleavage is
involved in nearly all aspects of cellular activities, ranging from gene regulation to cell life …

GraBCas: a bioinformatics tool for score-based prediction of Caspase-and Granzyme B-cleavage sites in protein sequences

C Backes, J Kuentzer, HP Lenhof… - Nucleic acids …, 2005 - academic.oup.com
Caspases and granzyme B are proteases that share the primary specificity to cleave at the
carboxyl terminal of aspartate residues in their substrates. Both, caspases and granzyme B …

Cascleave: towards more accurate prediction of caspase substrate cleavage sites

J Song, H Tan, H Shen, K Mahmood, SE Boyd… - …, 2010 - academic.oup.com
Motivation: The caspase family of cysteine proteases play essential roles in key biological
processes such as programmed cell death, differentiation, proliferation, necrosis and …

[HTML][HTML] Pripper: prediction of caspase cleavage sites from whole proteomes

M Piippo, N Lietzén, OS Nevalainen, J Salmi… - BMC …, 2010 - Springer
Background Caspases are a family of proteases that have central functions in programmed
cell death (apoptosis) and inflammation. Caspases mediate their effects through aspartate …

[HTML][HTML] Caspase cleavage sites in the human proteome: CaspDB, a database of predicted substrates

S Kumar, BJ van Raam, GS Salvesen, P Cieplak - PloS one, 2014 - journals.plos.org
Caspases are enzymes belonging to a conserved family of c ysteine-dependent asp artic-
specific prote ases that are involved in vital cellular processes and play a prominent role in …

[HTML][HTML] Developing a powerful In Silico tool for the discovery of novel caspase-3 substrates: a preliminary screening of the human proteome

M Ayyash, H Tamimi, Y Ashhab - BMC bioinformatics, 2012 - Springer
Background Caspases are a family of cysteinyl proteases that regulate apoptosis and other
biological processes. Caspase-3 is considered the central executioner member of this family …

[HTML][HTML] A multi-factor model for caspase degradome prediction

LJK Wee, JC Tong, TW Tan, S Ranganathan - BMC genomics, 2009 - Springer
Background Caspases belong to a class of cysteine proteases which function as critical
effectors in cellular processes such as apoptosis and inflammation by cleaving substrates …

Prediction of protease substrates using sequence and structure features

DT Barkan, DR Hostetter, S Mahrus, U Pieper… - …, 2010 - academic.oup.com
Abstract Motivation: Granzyme B (GrB) and caspases cleave specific protein substrates to
induce apoptosis in virally infected and neoplastic cells. While substrates for both types of …

[PDF][PDF] CaSPredictor: a new computer-based tool for caspase substrate prediction

HM Garay-Malpartida, JM Occhiucci, J Alves… - …, 2005 - academia.edu
Motivation: In vitro studies have shown that the most remarkable catalytic features of
caspases, a family of cysteineproteases, are their stringent specificity to Asp (D) in the S1 …