The risk of bias in denoising methods: Examples from neuroimaging

K Kay - PLoS One, 2022 - journals.plos.org
Experimental datasets are growing rapidly in size, scope, and detail, but the value of these
datasets is limited by unwanted measurement noise. It is therefore tempting to apply …

Removing independent noise in systems neuroscience data using DeepInterpolation

J Lecoq, M Oliver, JH Siegle, N Orlova… - Nature …, 2021 - nature.com
Progress in many scientific disciplines is hindered by the presence of independent noise.
Technologies for measuring neural activity (calcium imaging, extracellular electrophysiology …

The same analysis approach: Practical protection against the pitfalls of novel neuroimaging analysis methods

K Görgen, MN Hebart, C Allefeld, JD Haynes - Neuroimage, 2018 - Elsevier
Standard neuroimaging data analysis based on traditional principles of experimental
design, modelling, and statistical inference is increasingly complemented by novel analysis …

Highlight Results, Don't Hide Them: enhance interpretation, reduce biases and improve reproducibility

PA Taylor, RC Reynolds, V Calhoun… - Neuroimage, 2023 - Elsevier
Most neuroimaging studies display results that represent only a tiny fraction of the collected
data. While it is conventional to present" only the significant results" to the reader, here we …

[HTML][HTML] Denoising scanner effects from multimodal MRI data using linked independent component analysis

H Li, SM Smith, S Gruber, SE Lukas, MM Silveri, KP Hill… - Neuroimage, 2020 - Elsevier
Pooling magnetic resonance imaging (MRI) data across research studies, or utilizing shared
data from imaging repositories, presents exceptional opportunities to advance and enhance …

Assessing denoising strategies to increase signal to noise ratio in spinal cord and in brain cortical and subcortical regions

L Maugeri, M Moraschi, P Summers… - Journal of …, 2018 - iopscience.iop.org
Abstract Functional Magnetic Resonance Imaging (fMRI) based on Blood Oxygenation Level
Dependent (BOLD) contrast has become one of the most powerful tools in neuroscience …

The effect of a post-scan processing denoising system on image quality and morphometric analysis

N Kanemaru, H Takao, S Amemiya, O Abe - Journal of Neuroradiology, 2022 - Elsevier
Purpose: MR image quality and subsequent brain morphometric analysis are inevitably
affected by noise. The purpose of this study was to evaluate the effectiveness of an artificial …

Deconstructing multivariate decoding for the study of brain function

MN Hebart, CI Baker - Neuroimage, 2018 - Elsevier
Multivariate decoding methods were developed originally as tools to enable accurate
predictions in real-world applications. The realization that these methods can also be …

Analytical transparency and reproducibility in human neuroimaging studies

M Picciotto - Journal of Neuroscience, 2018 - Soc Neuroscience
The Journal of Neuroscience is committed to editorial transparency and scientific
excellence. Consistent with these goals, this editorial is the first of a series aimed at …

A survey on state-of-the-art denoising techniques for brain magnetic resonance images

PK Mishro, S Agrawal, R Panda… - IEEE Reviews in …, 2021 - ieeexplore.ieee.org
The accuracy of the magnetic resonance (MR) image diagnosis depends on the quality of
the image, which degrades mainly due to noise and artifacts. The noise is introduced …