Cellular trade-offs and optimal resource allocation during cyanobacterial diurnal growth

AM Reimers, H Knoop, A Bockmayr… - Proceedings of the …, 2017 - National Acad Sciences
Cyanobacteria are an integral part of Earth's biogeochemical cycles and a promising
resource for the synthesis of renewable bioproducts from atmospheric CO2. Growth and …

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis

J Nogales, S Gudmundsson… - Proceedings of the …, 2012 - National Acad Sciences
Photosynthesis has recently gained considerable attention for its potential role in the
development of renewable energy sources. Optimizing photosynthetic organisms for …

[HTML][HTML] Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803

H Knoop, M Gründel, Y Zilliges… - PLoS computational …, 2013 - journals.plos.org
Cyanobacteria are versatile unicellular phototrophic microorganisms that are highly
abundant in many environments. Owing to their capability to utilize solar energy and …

[HTML][HTML] A diurnal flux balance model of Synechocystis sp. PCC 6803 metabolism

D Sarkar, TJ Mueller, D Liu, HB Pakrasi… - PLoS computational …, 2019 - journals.plos.org
Phototrophic organisms such as cyanobacteria utilize the sun's energy to convert
atmospheric carbon dioxide into organic carbon, resulting in diurnal variations in the cell's …

Toward systems metabolic engineering in cyanobacteria: opportunities and bottlenecks

J Nogales, S Gudmundsson, I Thiele - Bioengineered, 2013 - Taylor & Francis
We recently assessed the metabolism of Synechocystis sp PCC6803 through a constraints-
based reconstruction and analysis approach and identified its main metabolic properties …

[HTML][HTML] Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC …

TT Vu, SM Stolyar, GE Pinchuk, EA Hill… - PLoS computational …, 2012 - journals.plos.org
Genome-scale metabolic models have proven useful for answering fundamental questions
about metabolic capabilities of a variety of microorganisms, as well as informing their …

The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth

H Knoop, Y Zilliges, W Lockau, R Steuer - Plant physiology, 2010 - academic.oup.com
Unicellular cyanobacteria have attracted growing attention as potential host organisms for
the production of valuable organic products and provide an ideal model to understand …

Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth

R Steuer, H Knoop, R Machné - Journal of experimental botany, 2012 - academic.oup.com
Cyanobacteria are phototrophic microorganisms of global importance and have recently
attracted increasing attention due to their capability to convert sunlight and atmospheric CO2 …

A model of optimal protein allocation during phototrophic growth

M Faizi, T Zavřel, C Loureiro, J Červený, R Steuer - Biosystems, 2018 - Elsevier
Photoautotrophic growth depends upon an optimal allocation of finite cellular resources to
diverse intracellular processes. Commitment of a certain mass fraction of the proteome to a …

Quantitative insights into the cyanobacterial cell economy

T Zavřel, M Faizi, C Loureiro, G Poschmann, K Stühler… - Elife, 2019 - elifesciences.org
Phototrophic microorganisms are promising resources for green biotechnology. Compared
to heterotrophic microorganisms, however, the cellular economy of phototrophic growth is …