Mining the biomedical literature in the genomic era: an overview

H Shatkay, R Feldman - Journal of computational biology, 2003 - liebertpub.com
The past decade has seen a tremendous growth in the amount of experimental and
computational biomedical data, specifically in the areas of genomics and proteomics. This …

Text-mining solutions for biomedical research: enabling integrative biology

D Rebholz-Schuhmann, A Oellrich… - Nature Reviews …, 2012 - nature.com
In response to the unbridled growth of information in literature and biomedical databases,
researchers require efficient means of handling and extracting information. As well as …

Literature mining for the biologist: from information retrieval to biological discovery

LJ Jensen, J Saric, P Bork - Nature reviews genetics, 2006 - nature.com
For the average biologist, hands-on literature mining currently means a keyword search in
PubMed. However, methods for extracting biomedical facts from the scientific literature have …

Getting to the (c) ore of knowledge: mining biomedical literature

B De Bruijn, J Martin - International journal of medical informatics, 2002 - Elsevier
Literature mining is the process of extracting and combining facts from scientific publications.
In recent years, many computer programs have been designed to extract various molecular …

Recent advances in biomedical literature mining

S Zhao, C Su, Z Lu, F Wang - Briefings in Bioinformatics, 2021 - academic.oup.com
The recent years have witnessed a rapid increase in the number of scientific articles in
biomedical domain. These literature are mostly available and readily accessible in …

A review of recent advancement in integrating omics data with literature mining towards biomedical discoveries

K Raja, M Patrick, Y Gao, D Madu… - … journal of genomics, 2017 - Wiley Online Library
In the past decade, the volume of “omics” data generated by the different high‐throughput
technologies has expanded exponentially. The managing, storing, and analyzing of this big …

The next generation of literature analysis: integration of genomic analysis into text mining

M Scherf, A Epple, T Werner - Briefings in bioinformatics, 2005 - academic.oup.com
Text-mining systems are indispensable tools to reduce the increasing flux of information in
scientific literature to topics pertinent to a particular interest in focus. Most of the scientific …

Text mining resources for the life sciences

P Przybyła, M Shardlow, S Aubin, R Bossy… - Database, 2016 - academic.oup.com
Text mining is a powerful technology for quickly distilling key information from vast quantities
of biomedical literature. However, to harness this power the researcher must be well versed …

[HTML][HTML] @ Note: a workbench for biomedical text mining

A Lourenço, R Carreira, S Carneiro, P Maia… - Journal of biomedical …, 2009 - Elsevier
Biomedical Text Mining (BioTM) is providing valuable approaches to the automated curation
of scientific literature. However, most efforts have addressed the benchmarking of new …

Application of text mining in the biomedical domain

WWM Fleuren, W Alkema - Methods, 2015 - Elsevier
In recent years the amount of experimental data that is produced in biomedical research and
the number of papers that are being published in this field have grown rapidly. In order to …