Biased mutation and selection in RNA viruses

T Kustin, A Stern - Molecular Biology and Evolution, 2021 - academic.oup.com
RNA viruses are responsible for some of the worst pandemics known to mankind, including
outbreaks of Influenza, Ebola, and COVID-19. One major challenge in tackling RNA viruses …

Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution

OG Pybus, A Rambaut, R Belshaw… - Molecular biology …, 2007 - academic.oup.com
Populations of RNA viruses are often characterized by abundant genetic variation. However,
the relative fitness of these mutations is largely unknown, although this information is central …

Error thresholds and the constraints to RNA virus evolution

EC Holmes - Trends in microbiology, 2003 - cell.com
RNA viruses are often thought of as possessing almost limitless adaptability as a result of
their extreme mutation rates. However, high mutation rates also put a cap on the size of the …

The effect of gene overlapping on the rate of RNA virus evolution

E Simon-Loriere, EC Holmes… - Molecular Biology and …, 2013 - academic.oup.com
Gene overlapping is widely employed by RNA viruses to generate genetic novelty while
retaining a small genome size. However, gene overlapping also increases the deleterious …

Mutational and fitness landscapes of an RNA virus revealed through population sequencing

A Acevedo, L Brodsky, R Andino - Nature, 2014 - nature.com
RNA viruses exist as genetically diverse populations. It is thought that diversity and genetic
structure of viral populations determine the rapid adaptation observed in RNA viruses and …

The comparative genomics of viral emergence

EC Holmes - Proceedings of the National Academy of …, 2010 - National Acad Sciences
RNA viruses are the main agents of emerging and re-emerging diseases. It is therefore
important to reveal the evolutionary processes that underpin their ability to jump species …

The evolutionary genetics of emerging viruses

EC Holmes - Annu. Rev. Ecol. Evol. Syst., 2009 - annualreviews.org
RNA viruses are the main agents of emerging disease. To understand how RNA viruses are
able to jump species boundaries and spread in new hosts it is essential to determine the …

Increased RNA virus population diversity improves adaptability

F Mattenberger, M Vila-Nistal, R Geller - Scientific reports, 2021 - nature.com
The replication machinery of most RNA viruses lacks proofreading mechanisms. As a result,
RNA virus populations harbor a large amount of genetic diversity that confers them the …

RNA virus genomics: a world of possibilities

EC Holmes - The Journal of clinical investigation, 2009 - Am Soc Clin Investig
The increasing availability of complete genome sequences of RNA viruses has the potential
to shed new light on fundamental aspects of their biology. Here, I use case studies of 3 RNA …

RNA virus population diversity: implications for inter-species transmission

AV Bordería, KA Stapleford, M Vignuzzi - Current opinion in virology, 2011 - Elsevier
RNA viruses are notorious for rapidly generating genetically diverse populations during a
single replication cycle, and the implications of this mutant population, often referred to as …