Comparison of DNA extraction methods for 16S rRNA gene sequencing in the analysis of the human gut microbiome

C Elie, M Perret, H Hage, E Sentausa, A Hesketh… - Scientific Reports, 2023 - nature.com
The gut microbiome is widely analyzed using high-throughput sequencing, such as 16S
rRNA gene amplicon sequencing and shotgun metagenomic sequencing (SMS). DNA …

Evaluation of fecal DNA extraction protocols for human gut microbiome studies

MY Lim, YS Park, JH Kim, YD Nam - BMC microbiology, 2020 - Springer
Background DNA extraction is an important factor influencing the microbiome profile in fecal
samples. Considering that the QIAamp DNA Stool Mini Kit, one of the most commonly used …

Quantitative assessment of shotgun metagenomics and 16S rDNA amplicon sequencing in the study of human gut microbiome

I Laudadio, V Fulci, F Palone, L Stronati… - OMICS: A Journal of …, 2018 - liebertpub.com
The analysis of microbiota composition in humans, animals, and built environments is
important because of emerging roles and applications in a broad range of disease and …

[HTML][HTML] Comparison of DNA extraction methods for human gut microbial community profiling

MY Lim, EJ Song, SH Kim, J Lee, YD Nam - Systematic and applied …, 2018 - Elsevier
The human gut harbors a vast range of microbes that have significant impact on health and
disease. Therefore, gut microbiome profiling holds promise for use in early diagnosis and …

Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform

P Videnska, K Smerkova, B Zwinsova, V Popovici… - Scientific reports, 2019 - nature.com
Many studies correlate changes in human gut microbiome with the onset of various
diseases, mostly by 16S rRNA gene sequencing. Setting up the optimal sampling and DNA …

Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing

S Mitra, K Förster-Fromme, A Damms-Machado… - BMC genomics, 2013 - Springer
Background Metagenomics seeks to understand microbial communities and assemblages
by DNA sequencing. Technological advances in next generation sequencing technologies …

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

R Ranjan, A Rani, A Metwally, HS McGee… - … and biophysical research …, 2016 - Elsevier
The human microbiome has emerged as a major player in regulating human health and
disease. Translational studies of the microbiome have the potential to indicate clinical …

Impact of DNA extraction, sample dilution, and reagent contamination on 16S rRNA gene sequencing of human feces

EP Velásquez-Mejía, J de la Cuesta-Zuluaga… - Applied microbiology …, 2018 - Springer
Culture-independent methods have granted the possibility to study microbial diversity in
great detail, but technical issues pose a threat to the accuracy of new findings. Biases …

A comprehensive automated pipeline for human microbiome sampling, 16S rRNA gene sequencing and bioinformatics processing

LW Hugerth, M Seifert, AAL Pennhag, J Du… - BioRxiv, 2018 - biorxiv.org
The advent of affordable high-throughput DNA sequencing has opened up a golden age of
studies in the human microbiome. In order to understand the role of the human microbiota …

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis

A Salonen, J Nikkilä, J Jalanka-Tuovinen… - Journal of …, 2010 - Elsevier
Several different protocols are used for fecal DNA extraction, which is an integral step in all
phylogenetic and metagenomic approaches to characterize the highly diverse intestinal …