[HTML][HTML] TraitCapture: genomic and environment modelling of plant phenomic data

TB Brown, R Cheng, XRR Sirault, T Rungrat… - Current opinion in plant …, 2014 - Elsevier
Highlights•High throughput phenotyping with genomic association.•Rapidly identifies
candidate genes.•Enables separation of pleiotropy and linkage to overcome …

Biological reality and parsimony in crop models—why we need both in crop improvement!

G Hammer, C Messina, A Wu, M Cooper - in silico Plants, 2019 - academic.oup.com
The potential to add significant value to the rapid advances in plant breeding technologies
associated with statistical whole-genome prediction methods is a new frontier for crop …

[HTML][HTML] Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding

FA Van Eeuwijk, D Bustos-Korts, EJ Millet, MP Boer… - Plant science, 2019 - Elsevier
New types of phenotyping tools generate large amounts of data on many aspects of plant
physiology and morphology with high spatial and temporal resolution. These new …

Models for navigating biological complexity in breeding improved crop plants

G Hammer, M Cooper, F Tardieu, S Welch, B Walsh… - Trends in plant …, 2006 - cell.com
Progress in breeding higher-yielding crop plants would be greatly accelerated if the
phenotypic consequences of making changes to the genetic makeup of an organism could …

Molecular breeding for complex adaptive traits: how integrating crop ecophysiology and modelling can enhance efficiency

G Hammer, C Messina, E van Oosterom… - Crop systems biology …, 2016 - Springer
Progress in crop improvement is limited by the ability to identify favourable combinations of
genotypes (G) and management practices (M) in relevant target environments (E) given the …

Phenotyping and beyond: modelling the relationships between traits

C Granier, D Vile - Current opinion in plant biology, 2014 - Elsevier
Highlights•Phenotyping platforms for measuring plant traits at different scales are
developed.•Need for data storage and analyses introduced the notion of phenotyping …

Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

Computational aspects underlying genome to phenome analysis in plants

AM Bolger, H Poorter, K Dumschott… - The Plant …, 2019 - Wiley Online Library
Recent advances in genomics technologies have greatly accelerated the progress in both
fundamental plant science and applied breeding research. Concurrently, high‐throughput …

Field-based phenomics for plant genetics research

JW White, P Andrade-Sanchez, MA Gore… - Field Crops …, 2012 - Elsevier
A major challenge for crop research in the 21st century is how to predict crop performance
as a function of genetic architecture. Advances in “next generation” DNA sequencing have …

[引用][C] From genome to phenome: genome‐wide association studies and other approaches that bridge the genotype to phenotype gap

AR Fernie, J Gutierrez‐Marcos - The Plant Journal, 2019 - Wiley Online Library
Two of the most relevant technological innovations that in the last decade have resulted in
significant advances in plant science are the development of next-generation sequencing …