[HTML][HTML] Predicting antimicrobial resistance in E. coli with discriminative position fused deep learning classifier

C Jin, C Jia, W Hu, H Xu, Y Shen, M Yue - Computational and Structural …, 2024 - Elsevier
Escherichia coli (E. coli) has become a particular concern due to the increasing incidence of
antimicrobial resistance (AMR) observed worldwide. Using machine learning (ML) to predict …

Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning

Y Ren, T Chakraborty, S Doijad, L Falgenhauer… - …, 2022 - academic.oup.com
Motivation Antimicrobial resistance (AMR) is one of the biggest global problems threatening
human and animal health. Rapid and accurate AMR diagnostic methods are thus very …

Genome-wide mutation scoring for machine-learning-based antimicrobial resistance prediction

P Májek, L Lüftinger, S Beisken, T Rattei… - International Journal of …, 2021 - mdpi.com
The prediction of antimicrobial resistance (AMR) based on genomic information can improve
patient outcomes. Genetic mechanisms have been shown to explain AMR with accuracies in …

Artificial intelligence for antimicrobial resistance prediction: challenges and opportunities towards practical implementation

T Ali, S Ahmed, M Aslam - Antibiotics, 2023 - mdpi.com
Antimicrobial resistance (AMR) is emerging as a potential threat to many lives worldwide. It
is very important to understand and apply effective strategies to counter the impact of AMR …

[PDF][PDF] Artificial Intelligence for Antimicrobial Resistance Prediction: Challenges and Opportunities towards Practical Implementation. Antibiotics. 2023; 12 (3): 523

T Ali, S Ahmed, M Aslam - 2023 - researchgate.net
Antimicrobial resistance (AMR) is emerging as a potential threat to many lives worldwide. It
is very important to understand and apply effective strategies to counter the impact of AMR …

Neural network-based predictions of antimicrobial resistance in Salmonella spp. using k-mers counting from whole-genome sequences

CC Barros - bioRxiv, 2021 - biorxiv.org
Artificial intelligence-based predictions have emerged as a friendly and reliable tool for the
surveillance of the antimicrobial resistance (AMR) worldwide. In this regard, genome …

HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes

Y Li, Z Xu, W Han, H Cao, R Umarov, A Yan, M Fan… - Microbiome, 2021 - Springer
Background The spread of antibiotic resistance has become one of the most urgent threats
to global health, which is estimated to cause 700,000 deaths each year globally. Its …

Machine learning and feature extraction for rapid antimicrobial resistance prediction of Acinetobacter baumannii from whole-genome sequencing data

Y Gao, H Li, C Zhao, S Li, G Yin, H Wang - Frontiers in Microbiology, 2024 - frontiersin.org
Background Whole-genome sequencing (WGS) has contributed significantly to
advancements in machine learning methods for predicting antimicrobial resistance (AMR) …

Systematic Evaluation of Whole-Genome Sequencing Based Prediction of Antimicrobial Resistance in Campylobacter jejuni and C. coli

LM Hodges, EN Taboada, A Koziol… - Frontiers in …, 2021 - frontiersin.org
The increasing prevalence of antimicrobial resistance (AMR) in Campylobacter spp. is a
global concern. This study evaluated the use of whole-genome sequencing (WGS) to predict …

[HTML][HTML] AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in Escherichia coli and Klebsiella pneumoniae

E Avershina, P Sharma, AM Taxt, H Singh… - Computational and …, 2021 - Elsevier
Antibiotic resistance poses a major threat to public health. More effective ways of the
antibiotic prescription are needed to delay the spread of antibiotic resistance. Employment of …