[HTML][HTML] Estimation of immune cell content in tumour tissue using single-cell RNA-seq data

M Schelker, S Feau, J Du, N Ranu, E Klipp… - Nature …, 2017 - nature.com
As interactions between the immune system and tumour cells are governed by a complex
network of cell–cell interactions, knowing the specific immune cell composition of a solid …

[HTML][HTML] Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

B Li, E Severson, JC Pignon, H Zhao, T Li, J Novak… - Genome biology, 2016 - Springer
Background Understanding the interactions between tumor and the host immune system is
critical to finding prognostic biomarkers, reducing drug resistance, and developing new …

[HTML][HTML] Atlas of breast cancer infiltrated B-lymphocytes revealed by paired single-cell RNA-sequencing and antigen receptor profiling

Q Hu, Y Hong, P Qi, G Lu, X Mai, S Xu, X He… - Nature …, 2021 - nature.com
To gain mechanistic insights into the functions and developmental dynamics of tumor-
infiltrated immune cells, especially B-lymphocytes, here we combine single-cell RNA …

[HTML][HTML] Systemic immunity is required for effective cancer immunotherapy

MH Spitzer, Y Carmi, NE Reticker-Flynn, SS Kwek… - Cell, 2017 - cell.com
Immune responses involve coordination across cell types and tissues. However, studies in
cancer immunotherapy have focused heavily on local immune responses in the tumor …

[HTML][HTML] Tumor-associated macrophage heterogeneity is driven by tissue territories in breast cancer

M Laviron, M Petit, E Weber-Delacroix, AJ Combes… - Cell reports, 2022 - cell.com
Tissue-resident macrophages adapt to local signals within tissues to acquire specific
functions. Neoplasia transforms the tissue, raising the question as to how the environmental …

[HTML][HTML] Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer

I Nederlof, D De Bortoli, Y Bareche, B Nguyen… - Breast cancer …, 2019 - Springer
Background Breast cancer (BC) immune infiltrates play a critical role in tumor progression
and response to treatment. Besides stromal tumor infiltrating lymphocytes (sTILs) which …

Recharacterizing tumor-infiltrating lymphocytes by single-cell RNA sequencing

L Zhang, Z Zhang - Cancer immunology research, 2019 - AACR
T cells are central players in cancer immunotherapy. Despite much concentrated effort on
the study of tumor-infiltrating lymphocytes (TIL), such as T cells, a series of fundamental …

[HTML][HTML] Chemotherapy induces dynamic immune responses in breast cancers that impact treatment outcome

YH Park, S Lal, JE Lee, YL Choi, J Wen, S Ram… - Nature …, 2020 - nature.com
To elucidate the effects of neoadjuvant chemotherapy (NAC), we conduct whole
transcriptome profiling coupled with histopathology analyses of a longitudinal breast cancer …

[HTML][HTML] An independent poor-prognosis subtype of breast cancer defined by a distinct tumor immune microenvironment

X Tekpli, T Lien, AH Røssevold, D Nebdal… - Nature …, 2019 - nature.com
How mixtures of immune cells associate with cancer cell phenotype and affect pathogenesis
is still unclear. In 15 breast cancer gene expression datasets, we invariably identify three …

[HTML][HTML] Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease

PA Szabo, HM Levitin, M Miron, ME Snyder… - Nature …, 2019 - nature.com
Human T cells coordinate adaptive immunity in diverse anatomic compartments through
production of cytokines and effector molecules, but it is unclear how tissue site influences T …