Transition state characteristics during cell differentiation

RD Brackston, E Lakatos… - PLoS computational …, 2018 - journals.plos.org
Models describing the process of stem-cell differentiation are plentiful, and may offer insights
into the underlying mechanisms and experimentally observed behaviour. Waddington's …

Novel generic models for differentiating stem cells reveal oscillatory mechanisms

S Farjami, K Camargo Sosa… - Journal of The …, 2021 - royalsocietypublishing.org
Understanding cell fate selection remains a central challenge in developmental biology. We
present a class of simple yet biologically motivated mathematical models for cell …

A deterministic map of Waddington's epigenetic landscape for cell fate specification

S Bhattacharya, Q Zhang, ME Andersen - BMC systems biology, 2011 - Springer
Background The image of the" epigenetic landscape", with a series of branching valleys and
ridges depicting stable cellular states and the barriers between those states, has been a …

Phenotypic evolutionary models in stem cell biology: replacement, quiescence, and variability

M Mangel, MB Bonsall - PLoS one, 2008 - journals.plos.org
Phenotypic evolutionary models have been used with great success in many areas of
biology, but thus far have not been applied to the study of stem cells except for investigations …

Epigenetic state network approach for describing cell phenotypic transitions

P Wang, C Song, H Zhang, Z Wu, XJ Tian… - Interface …, 2014 - royalsocietypublishing.org
Recent breakthroughs of cell phenotype reprogramming impose theoretical challenges on
unravelling the complexity of large circuits maintaining cell phenotypes coupled at many …

Transition states and cell fate decisions in epigenetic landscapes

N Moris, C Pina, AM Arias - Nature Reviews Genetics, 2016 - nature.com
Waddington's epigenetic landscape is an abstract metaphor frequently used to represent the
relationship between gene activity and cell fates during development. Over the past few …

Quantifying the interplay between genetic and epigenetic regulations in stem cell development

Y Zhang, N Liu, W Lin, C Li - New Journal of Physics, 2019 - iopscience.iop.org
Waddington epigenetic landscape, as a classic metaphor, has been used to explain cellular
development and differentiation. However, it remains challenging to quantify the epigenetic …

Branching and oscillations in the epigenetic landscape of cell-fate determination

JF Rabajante, AL Babierra - Progress in biophysics and molecular biology, 2015 - Elsevier
The well-known Waddington's epigenetic landscape of cell-fate determination is not static
but varies because of the dynamic gene regulation during development. However, existing …

Systems biology approaches to understanding stem cell fate choice

J Peltier, DV Schaffer - IET Systems Biology, 2010 - IET
Stem cells have the capability to self-renew and maintain their undifferentiated state or to
differentiate into one or more specialised cell types. Stem cell expansion and manipulation …

A model of sequential branching in hierarchical cell fate determination

DV Foster, JG Foster, S Huang, SA Kauffman - Journal of theoretical …, 2009 - Elsevier
Multipotent stem or progenitor cells undergo a sequential series of binary fate decisions,
which ultimately generate the diversity of differentiated cells. Efforts to understand cell fate …