Mathematical modeling of RNA-based architectures for closed loop control of gene expression

DK Agrawal, X Tang, A Westbrook… - ACS synthetic …, 2018 - ACS Publications
Feedback allows biological systems to control gene expression precisely and reliably, even
in the presence of uncertainty, by sensing and processing environmental changes. Taking …

Achieving large dynamic range control of gene expression with a compact RNA transcription–translation regulator

AM Westbrook, JB Lucks - Nucleic Acids Research, 2017 - academic.oup.com
RNA transcriptional regulators are emerging as versatile components for genetic network
construction. However, these regulators suffer from incomplete repression in their OFF state …

RNA-based dynamic genetic controllers: development strategies and applications

S Jang, S Jang, J Yang, SW Seo, GY Jung - Current opinion in …, 2018 - Elsevier
Highlights•Unique properties of RNA lead to the development of RNA-based dynamic
genetic controllers.•Natural riboswitches are re-engineered to detect new molecules.•RNA …

Brave new 'RNA'world—advances in RNA tools and their application for understanding and engineering biological systems

A Ameruoso, L Gambill, B Liu, MCV Kcam… - Current Opinion in …, 2019 - Elsevier
Our ability to program how cells express their genetic material is central to our ability to
understand and engineer them. While a range of biomolecules can be used to control gene …

A synthetic library of RNA control modules for predictable tuning of gene expression in yeast

AH Babiskin, CD Smolke - Molecular systems biology, 2011 - embopress.org
Advances in synthetic biology have resulted in the development of genetic tools that support
the design of complex biological systems encoding desired functions. The majority of efforts …

RNA-based controllers for engineering gene and cell therapies

K Takahashi, KE Galloway - Current Opinion in Biotechnology, 2024 - Elsevier
Highlights•RNA offers highly compact, modular, portable, and programmable gene
regulation.•Ligand-responsive riboswitches allow for user-guided control of …

Design and construction of generalizable RNA-protein hybrid controllers by level-matched genetic signal amplification

YH Wang, M McKeague, TM Hsu, CD Smolke - Cell systems, 2016 - cell.com
For synthetic biology applications, protein-based transcriptional genetic controllers are
limited in terms of orthogonality, modularity, and portability. Although ribozyme-based …

[HTML][HTML] A renaissance in RNA synthetic biology: new mechanisms, applications and tools for the future

J Chappell, KE Watters, MK Takahashi… - Current opinion in …, 2015 - Elsevier
Highlights•We review recent progress in RNA synthetic biology.•New advances in synthetic
RNA regulator design have created high-performing/functioning parts.•New generation of …

Design and evaluation of synthetic RNA-based incoherent feed-forward loop circuits

S Hong, D Jeong, J Ryan, M Foo, X Tang, J Kim - Biomolecules, 2021 - mdpi.com
RNA-based regulators are promising tools for building synthetic biological systems that
provide a powerful platform for achieving a complex regulation of transcription and …

Synthetic biology by controller design

C Barajas, D Del Vecchio - Current Opinion in Biotechnology, 2022 - Elsevier
Highlights•Feedback and feedforward motifs shape the steady state, temporal properties,
and noise profiles of gene expression systems.•Feedback and feedforward controllers make …