A single-nucleus atlas of seed-to-seed development in Arabidopsis

TA Lee, T Nobori, N Illouz-Eliaz, J Xu, B Jow, JR Nery… - bioRxiv, 2023 - biorxiv.org
Extensive studies of the reference plant Arabidopsis have enabled deep understandings of
tissues throughout development, yet a census of cell types and states throughout …

Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo

J Palovaara, S Saiga, JR Wendrich… - Nature Plants, 2017 - nature.com
During early plant embryogenesis, precursors for all major tissues and stem cells are
formed. While several components of the regulatory framework are known, how cell fates are …

Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf

CB Lopez-Anido, A Vatén, NK Smoot, N Sharma… - Developmental cell, 2021 - cell.com
Dynamic cell identities underlie flexible developmental programs. The stomatal lineage in
the Arabidopsis leaf epidermis features asynchronous and indeterminate divisions that can …

Gene expression variation in Arabidopsis embryos at single-nucleus resolution

P Kao, MA Schon, M Mosiolek, B Enugutti… - …, 2021 - journals.biologists.com
Soon after fertilization of egg and sperm, plant genomes become transcriptionally activated
and drive a series of coordinated cell divisions to form the basic body plan during …

Transcriptomics approaches in the early Arabidopsis embryo

J Palovaara, S Saiga, D Weijers - Trends in Plant Science, 2013 - cell.com
Early plant embryogenesis condenses the fundamental processes underlying plant
development into a short sequence of predictable steps. The main tissues, as well as stem …

Cell lineage-specific transcriptome analysis for interpreting cell fate specification of proembryos

X Zhou, Z Liu, K Shen, P Zhao, MX Sun - Nature communications, 2020 - nature.com
In Arabidopsis, a zygote undergoes asymmetrical cell division that establishes the first two
distinct cell types of early proembryos, apical and basal cells. However, the genome-wide …

Adapting INTACT to analyse cell-type-specific transcriptomes and nucleocytoplasmic mRNA dynamics in the Arabidopsis embryo

J Palovaara, D Weijers - Plant reproduction, 2019 - Springer
In the early embryo of vascular plants, the different cell types and stem cells of the seedling
are specified as the embryo develops from a zygote towards maturity. How the key steps in …

Gene expression atlas of embryo development in Arabidopsis

P Gao, D Xiang, TD Quilichini, P Venglat, PK Pandey… - Plant reproduction, 2019 - Springer
Embryogenesis represents a critical phase in the life cycle of flowering plants. Here, we
characterize transcriptome landscapes associated with key stages of embryogenesis by …

Single-cell genomics revolutionizes plant development studies across scales

M Zhu, IW Taylor, PN Benfey - Development, 2022 - journals.biologists.com
Understanding the development of tissues, organs and entire organisms through the lens of
single-cell genomics has revolutionized developmental biology. Although single-cell …

Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

D Shi, V Jouannet, J Agustí, V Kaul, V Levitsky… - The Plant …, 2021 - academic.oup.com
Genome-wide gene expression maps with a high spatial resolution have substantially
accelerated plant molecular science. However, the number of characterized tissues and …