Potential utility of targeted Nanopore sequencing for improving etiologic diagnosis of bacterial and fungal respiratory infection

WS Chan, CH Au, SM Leung, DN Ho, EYL Wong… - Diagnostic …, 2020 - Springer
Background Diversified etiology of lower respiratory tract infection renders diagnosis
challenging. The mainstay microbial culture is time-consuming and constrained by variable …

Application of Nanopore sequencing in the diagnosis and treatment of pulmonary infections

J Chen, F Xu - Molecular Diagnosis & Therapy, 2023 - Springer
This review provides an in-depth discussion of the development, principles and utility of
nanopore sequencing technology and its diverse applications in the identification of various …

Nanopore-based metagenomic sequencing in respiratory tract infection: a developing diagnostic platform

R Chapman, L Jones, A D'Angelo, A Suliman, M Anwar… - Lung, 2023 - Springer
Respiratory tract infection (RTI) remains a significant cause of morbidity and mortality across
the globe. The optimal management of RTI relies upon timely pathogen identification via …

A dual-process of targeted and unbiased Nanopore sequencing enables accurate and rapid diagnosis of lower respiratory infections

Y Guo, Z Li, L Li, S Li, L Sun, X Yang, Y Dai, J Gu… - …, 2023 - thelancet.com
Background Nanopore metagenomics has been used for infectious disease diagnosis for
bacterial pathogens. However, this technology currently lacks comprehensive performance …

Clinical performance of nanopore targeted sequencing for diagnosing infectious diseases

Y Fu, Q Chen, M Xiong, J Zhao, S Shen… - Microbiology …, 2022 - Am Soc Microbiol
The gold standard for confirming bacterial infections is culture-positive, which has a long
sample-to-result turnaround time and poor sensitivity for unculturable and fastidious …

The application of nanopore targeted sequencing for pathogen diagnosis in bronchoalveolar lavage fluid of patients with pneumonia: a prospective multicenter study

Q Lin, Y Yao, X Li, S Zhang, H Guo, X Ma… - Infectious …, 2024 - Taylor & Francis
Objective To evaluate the value of nanopore targeted sequencing in diagnosing pneumonia
pathogens. Methods This large-scale multicentre prospective study performed in 8 hospitals …

The application of targeted nanopore sequencing for the identification of pathogens and resistance genes in lower respiratory tract infections

H Zhang, M Wang, X Han, T Wang, Y Lei… - Frontiers in …, 2022 - frontiersin.org
Objectives Lower respiratory tract infections (LRTIs) are one of the causes of mortality
among infectious diseases. Microbial cultures commonly used in clinical practice are time …

Clinical application of nanopore-targeted sequencing technology in bronchoalveolar lavage fluid from patients with pulmonary infections

J Ye, K Huang, Y Xu, N Chen, Y Tu, J Huang… - Microbiology …, 2024 - Am Soc Microbiol
The rapid and effective identification of pathogens in patients with pulmonary infections has
posed a persistent challenge in medicine, with conventional microbiological tests (CMTs) …

Diagnosis of lower respiratory tract infections using nanopore sequencing

T Charalampous, H Richardson, G Kay, R Baldan… - 2018 - Eur Respiratory Soc
Background: According to WHO, lower respiratory tract infections (LRTI) are the deadliest
communicable disease globally, causing 3.2 million deaths annually. Culture is the gold …

The applications of nanopore sequencing technology in pathogenic microorganism detection

X Zhu, S Yan, F Yuan, S Wan - Canadian Journal of Infectious …, 2020 - Wiley Online Library
Infectious diseases are major threats to human health and lead to a serious public health
burden. The emergence of new pathogens and the mutation of known pathogens challenge …