How to completely squeeze a fungus—advanced genome mining tools for novel bioactive substances

A Schüller, L Studt-Reinhold, J Strauss - Pharmaceutics, 2022 - mdpi.com
Fungal species have the capability of producing an overwhelming diversity of bioactive
substances that can have beneficial but also detrimental effects on human health. These so …

Strategies for natural product discovery by unlocking cryptic biosynthetic gene clusters in fungi

JY Hur, E Jeong, YC Kim, SR Lee - Separations, 2023 - mdpi.com
Recent advancements in genome sequencing and bioinformatic analysis of fungal genomes
have revealed that fungi possess cryptic or silent biosynthetic gene clusters (BGCs). This …

Unearthing fungal chemodiversity and prospects for drug discovery

C Greco, NP Keller, A Rokas - Current opinion in microbiology, 2019 - Elsevier
Highlights•Fungi are an excellent source of drugs, and their full potential in producing
different metabolites is still largely untapped.•Several heterologous platforms have been …

FunARTS, the Fungal bioActive compound Resistant Target Seeker, an exploration engine for target-directed genome mining in fungi

TM Yılmaz, MD Mungan, A Berasategui… - Nucleic acids …, 2023 - academic.oup.com
There is an urgent need to diversify the pipeline for discovering novel natural products due
to the increase in multi-drug resistant infections. Like bacteria, fungi also produce secondary …

Toward awakening cryptic secondary metabolite gene clusters in filamentous fungi

FY Lim, JF Sanchez, CCC Wang, NP Keller - Methods in enzymology, 2012 - Elsevier
Mining for novel natural compounds is of eminent importance owing to the continuous need
for new pharmaceuticals. Filamentous fungi are historically known to harbor the genetic …

[HTML][HTML] Computational strategies for genome-based natural product discovery and engineering in fungi

TAJ van der Lee, MH Medema - Fungal Genetics and Biology, 2016 - Elsevier
Fungal natural products possess biological activities that are of great value to medicine,
agriculture and manufacturing. Recent metagenomic studies accentuate the vastness of …

Mining and unearthing hidden biosynthetic potential

K Scherlach, C Hertweck - Nature Communications, 2021 - nature.com
Genetically encoded small molecules (secondary metabolites) play eminent roles in
ecological interactions, as pathogenicity factors and as drug leads. Yet, these chemical …

Genome-based bioprospecting of microbes for new therapeutics

SB Zotchev, ON Sekurova, L Katz - Current opinion in biotechnology, 2012 - Elsevier
Bioprospecting of natural sources for new medicines has a long and successful history,
exemplified by the fact that over 50% of all drugs currently on the market are either derived …

Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products

YF Li, KJS Tsai, CJB Harvey, JJ Li, BE Ary… - Fungal Genetics and …, 2016 - Elsevier
Microorganisms produce a wide range of natural products (NPs) with clinically and
agriculturally relevant biological activities. In bacteria and fungi, genes encoding successive …

[HTML][HTML] Global Analysis of Natural Products Biosynthetic Diversity Encoded in Fungal Genomes

S Zhang, G Shi, X Xu, X Guo, S Li, Z Li, Q Wu… - Journal of …, 2024 - pmc.ncbi.nlm.nih.gov
Fungal secondary metabolites (SMs) represent an invaluable source of therapeutic drugs.
Genomics-based approaches to SM discovery have revealed a vast and largely untapped …