DTMiner: identification of potential disease targets through biomedical literature mining

D Xu, M Zhang, Y Xie, F Wang, M Chen, KQ Zhu… - …, 2016 - academic.oup.com
Motivation: Biomedical researchers often search through massive catalogues of literature to
look for potential relationships between genes and diseases. Given the rapid growth of …

Mining the literature and large datasets

J Labaer - Nature Biotechnology, 2003 - nature.com
Harvard recently developed a freely accessible automated literaturemining tool, termed
MedGene, that comprehensively summarizes the relationships among over 50,000 named …

Darling: a web application for detecting disease-related biomedical entity associations with literature mining

E Karatzas, FA Baltoumas, I Kasionis, D Sanoudou… - Biomolecules, 2022 - mdpi.com
Finding, exploring and filtering frequent sentence-based associations between a disease
and a biomedical entity, co-mentioned in disease-related PubMed literature, is a challenge …

Diseases 2.0: a weekly updated database of disease–gene associations from text mining and data integration

D Grissa, A Junge, TI Oprea, LJ Jensen - Database, 2022 - academic.oup.com
The scientific knowledge about which genes are involved in which diseases grows rapidly,
which makes it difficult to keep up with new publications and genetics datasets. The …

Renet: A deep learning approach for extracting gene-disease associations from literature

Y Wu, R Luo, HCM Leung, HF Ting, TW Lam - … , DC, USA, May 5-8, 2019 …, 2019 - Springer
Over one million new biomedical articles are published every year. Efficient and accurate
text-mining tools are urgently needed to automatically extract knowledge from these articles …

SCREENER: Streamlined collaborative learning of NER and RE model for discovering gene-disease relations

M Park, CU Jeong, YS Baik, DG Lee, JU Park, HJ Koo… - Plos one, 2023 - journals.plos.org
Finding relations between genes and diseases is essential in developing a clinical
diagnosis, treatment, and drug design for diseases. One successful approach for mining the …

Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research

À Bravo, J Piñero, N Queralt-Rosinach, M Rautschka… - BMC …, 2015 - Springer
Background Current biomedical research needs to leverage and exploit the large amount of
information reported in scientific publications. Automated text mining approaches, in …

A knowledge‐driven approach to extract disease‐related biomarkers from the literature

A Bravo, M Cases, N Queralt-Rosinach… - BioMed research …, 2014 - Wiley Online Library
The biomedical literature represents a rich source of biomarker information. However, both
the size of literature databases and their lack of standardization hamper the automatic …

Development and Validation of an AI‐Driven System for Automatic Literature Analysis and Molecular Regulatory Network Construction

J Li, H Zhang, J Wang, M Deng, Z Li, W Jiang… - Advanced …, 2024 - Wiley Online Library
Decoding gene regulatory networks is essential for understanding the mechanisms
underlying many complex diseases. GENET is developed, an automated system designed …

Gene‐Disease Interaction Retrieval from Multiple Sources: A Network Based Method

L Huang, Y Wang, Y Wang, T Bai - BioMed Research …, 2016 - Wiley Online Library
The number of gene‐related databases has been growing largely along with the research
on genes of bioinformatics. Those databases are filled with various gene functions …