Sequence-directed action of RSC remodeler and general regulatory factors modulates+ 1 nucleosome position to facilitate transcription

S Kubik, E O'Duibhir, WJ de Jonge, S Mattarocci… - Molecular cell, 2018 - cell.com
Accessible chromatin is important for RNA polymerase II recruitment and transcription
initiation at eukaryotic promoters. We investigated the mechanistic links between promoter …

SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes

ML Dechassa, A Sabri, S Pondugula, SR Kassabov… - Molecular cell, 2010 - cell.com
The ATP-dependent chromatin remodeling complex SWI/SNF regulates transcription and
has been implicated in promoter nucleosome eviction. Efficient nucleosome disassembly by …

Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules

A Shundrovsky, CL Smith, JT Lis, CL Peterson… - Nature structural & …, 2006 - nature.com
Chromatin-remodeling enzymes can overcome strong histone-DNA interactions within the
nucleosome to regulate access of DNA-binding factors to the genetic code. By unzipping …

Theory of site-specific DNA-protein interactions in the presence of nucleosome roadblocks

R Murugan - Biophysical journal, 2018 - cell.com
We show that nucleosomes exert a maximal amount of hindrance to the one-dimensional
diffusion of transcription factors (TFs) when they are present between TFs and their cognate …

Systematic study of nucleosome-displacing factors in budding yeast

C Yan, H Chen, L Bai - Molecular cell, 2018 - cell.com
Nucleosomes present a barrier for the binding of most transcription factors (TFs). However,
special TFs known as nucleosome-displacing factors (NDFs) can access embedded sites …

Stochastic models of nucleosome dynamics reveal regulatory rules of stimulus-induced epigenome remodeling

J Kim, KM Sheu, QJ Cheng, A Hoffmann, G Enciso - Cell reports, 2022 - cell.com
The genomic positions of nucleosomes are a defining feature of the cell's epigenomic state,
but signal-dependent transcription factors (SDTFs), upon activation, bind to specific genomic …

A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization

T Gkikopoulos, P Schofield, V Singh, M Pinskaya… - Science, 2011 - science.org
The positioning of nucleosomes within the coding regions of eukaryotic genes is aligned
with respect to transcriptional start sites. This organization is likely to influence many genetic …

Nucleosome repositioning underlies dynamic gene expression

N Nocetti, I Whitehouse - Genes & development, 2016 - genesdev.cshlp.org
Nucleosome repositioning at gene promoters is a fundamental aspect of the regulation of
gene expression. However, the extent to which nucleosome repositioning is used within …

Stable remodeling of tailless nucleosomes by the human SWI-SNF complex

JR Guyon, GJ Narlikar, S Sif… - Molecular and cellular …, 1999 - Taylor & Francis
The histone N-terminal tails have been shown previously to be important for chromatin
assembly, remodeling, and stability. We have tested the ability of human SWI-SNF (hSWI …

The SWI/SNF complex creates loop domains in DNA and polynucleosome arrays and can disrupt DNA-histone contacts within these domains

DP Bazett-Jones, J Côté, CC Landel… - … and cellular biology, 1999 - Am Soc Microbiol
To understand the mechanisms by which the chromatin-remodeling SWI/SNF complex
interacts with DNA and alters nucleosome organization, we have imaged the SWI/SNF …