The chromatin remodelling enzymes SNF2H and SNF2L position nucleosomes adjacent to CTCF and other transcription factors

N Wiechens, V Singh, T Gkikopoulos, P Schofield… - PLoS …, 2016 - journals.plos.org
Within the genomes of metazoans, nucleosomes are highly organised adjacent to the
binding sites for a subset of transcription factors. Here we have sought to investigate which …

Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF

A Hamiche, JG Kang, C Dennis… - Proceedings of the …, 2001 - National Acad Sciences
Nu cleosome R emodeling F actor (NURF) is an ATP-dependent nucleosome remodeling
complex that alters chromatin structure by catalyzing nucleosome sliding, thereby exposing …

Exposing the core promoter is sufficient to activate transcription and alter coactivator requirement at RNR3

H Zhang, JC Reese - … of the National Academy of Sciences, 2007 - National Acad Sciences
Chromatin is a formidable barrier to transcription. Nucleosome density is lowest over the
regulatory regions of active genes, and many repressed genes have a tightly positioned …

Nucleosome positioning and modification: chromatin structures that potentiate transcription

AP Wolffe - Trends in biochemical sciences, 1994 - cell.com
The~'ole of the nucleosome in the folding of DNA has often been thought of as purely a
packaging one. However, the precise folding of regulatory sequences of genes around the …

In silico evidence for sequence-dependent nucleosome sliding

J Lequieu, DC Schwartz… - Proceedings of the …, 2017 - National Acad Sciences
Nucleosomes represent the basic building block of chromatin and provide an important
mechanism by which cellular processes are controlled. The locations of nucleosomes …

SWI/SNF-and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes

N Liu, CL Peterson, JJ Hayes - Molecular and cellular biology, 2011 - Taylor & Francis
The multisubunit SWI/SNF and RSC complexes utilize energy derived from ATP hydrolysis
to mobilize nucleosomes and render the DNA accessible for various nuclear processes …

Mechanisms for ATP-dependent chromatin remodelling

I Whitehouse, A Flaus, K Havas… - Biochemical Society …, 2000 - portlandpress.com
Gene regulation involves the generation of a local chromatin topology that is conducive to
transcription. Several classes of chromatin remodelling activity have been shown to play a …

Nucleosome organization in the vicinity of transcription factor binding sites in the human genome

Y Nie, X Cheng, J Chen, X Sun - BMC genomics, 2014 - Springer
Background The binding of transcription factors (TFs) to specific DNA sequences is an initial
and crucial step of transcription. In eukaryotes, this process is highly dependent on the local …

Mechanisms of transcription factor binding and cofactor activity in chromatin

M Pregnolato - 2022 - edoc.unibas.ch
Organisms rely on the establishment of specific gene expression patterns to ensure proper
development and response to external cues. Transcription factors (TFs) and cofactors are …

Nucleosome remodeling factor NURF and in vitro transcription of chromatin

G Mizuguchi, C Wu - Chromatin Protocols, 1999 - Springer
A central problem in the control of eukaryotic gene expression is how the compaction of
DNA in chromatin is overcome to allow the initiation and elongation of transcription (1–6) …