The interaction of transcription factors with nucleosomal DNA

JJ Hayes, AP Wolffe - Bioessays, 1992 - Wiley Online Library
Nucleosome positioning is proposed to have an essential role in facilitating the regulated
transcription of eukaryotic genes. Some transcription factors can bind to DNA when it is …

Dynamics of chromatin and transcription during transient depletion of the RSC chromatin remodeling complex

A Klein-Brill, D Joseph-Strauss, A Appleboim… - Cell reports, 2019 - cell.com
Nucleosome organization has a key role in transcriptional regulation, yet the precise
mechanisms establishing nucleosome locations and their effect on transcription are unclear …

The Swi/Snf family: nucleosome-remodeling complexes and transcriptional control

P Sudarsanam, F Winston - TRENDS in Genetics, 2000 - cell.com
Abstract The Swi/Snf family of nucleosome-remodeling complexes has been shown to play
important roles in gene expression throughout eukaryotes. Genetic and biochemical studies …

Nucleosomal context of binding sites influences transcription factor binding affinity and gene regulation

Z Dai, X Dai, Q Xiang, J Feng - Genomics, Proteomics and …, 2009 - academic.oup.com
Transcription factor (TF) binding to its DNA target site plays an essential role in gene
regulation. The location, orientation and spacing of transcription factor binding sites (TFBSs) …

The synergy between RSC, Nap1 and adjacent nucleosome in nucleosome remodeling

KW Hsu, SY Chow, BY Su, YH Lu, CJ Chen… - … et Biophysica Acta (BBA …, 2019 - Elsevier
Eukaryotes have evolved a specific strategy to package DNA. The nucleosome is a 147-
base-pair DNA segment wrapped around histone core proteins that plays important roles …

The universality of nucleosome positioning: From yeast to human

RV Chereji, DJ Clark - Biophysical Journal, 2017 - cell.com
Nucleosome organization is important for the understanding of promoter accessibility and
transcription regulation. In the past decade, in vivo nucleosome mapping suggested a …

Large-scale ATP-independent nucleosome unfolding by a histone chaperone

ME Valieva, GA Armeev, KS Kudryashova… - Nature structural & …, 2016 - nature.com
DNA accessibility to regulatory proteins is substantially influenced by nucleosome structure
and dynamics. The facilitates chromatin transcription (FACT) complex increases the …

Nucleosome free regions in yeast promoters result from competitive binding of transcription factors that interact with chromatin modifiers

EA Ozonov, E van Nimwegen - PLoS computational biology, 2013 - journals.plos.org
Because DNA packaging in nucleosomes modulates its accessibility to transcription factors
(TFs), unraveling the causal determinants of nucleosome positioning is of great importance …

Nucleosome breathing facilitates the search for hidden DNA sites by pioneer transcription factors

A Mondal, C Felipe, AB Kolomeisky - The Journal of Physical …, 2023 - ACS Publications
Transfer of genetic information starts with transcription factors (TFs) binding to specific sites
on DNA. But in living cells, DNA is mostly covered by nucleosomes. There are proteins …

Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions

Y Lorch, B Maier-Davis, RD Kornberg - Genes & development, 2014 - genesdev.cshlp.org
AT-rich DNA is concentrated in the nucleosome-free regions (NFRs) associated with
transcription start sites of most genes. We tested the hypothesis that AT-rich DNA engenders …