Decoding cell-type contributions to the cfRNA transcriptomic landscape of liver cancer

A Safrastyan, CH Zu Siederdissen, D Wollny - Human Genomics, 2023 - Springer
Background Liquid biopsy, particularly cell-free RNA (cfRNA), has emerged as a promising
non-invasive diagnostic tool for various diseases, including cancer, due to its accessibility …

[HTML][HTML] Emerging Role of Circulating Cell-Free RNA as a Non-Invasive Biomarker for Hepatocellular Carcinoma

D Shetti, VR Mallela, W Ye, M Sharif… - Critical Reviews in …, 2024 - Elsevier
Hepatocellular carcinoma (HCC) is a severe neoplastic disease associated with high
morbidity and mortality rates. HCC is often detected at advanced stages leading to …

Plasma cell-free RNA profiling distinguishes cancers from pre-malignant conditions in solid and hematologic malignancies

B Roskams-Hieter, HJ Kim, P Anur, JT Wagner… - NPJ Precision …, 2022 - nature.com
Cell-free RNA (cfRNA) in plasma reflects phenotypic alterations of both localized sites of
cancer and the systemic host response. Here we report that cfRNA sequencing enables the …

Patient-specific alterations in blood plasma cfRNA profiles enable accurate classification of cancer patients and controls

A Morlion, P Decruyenaere, K Schoofs, J Anckaert… - medRxiv, 2023 - medrxiv.org
Circulating nucleic acids in blood plasma form an attractive resource to study human health
and disease. Here, we applied mRNA capture sequencing of blood plasma cell-free RNA …

Cell‐free RNA for the liquid biopsy of gastrointestinal cancer

S Xing, Y Zhu, Y You, S Wang, H Wang… - Wiley …, 2023 - Wiley Online Library
Gastrointestinal (GI) cancer includes many cancer types, such as esophageal, liver, gastric,
pancreatic, and colorectal cancer. As the cornerstone of personalized medicine for GI …

Integrated analysis of circulating cell free nucleic acids for cancer genotyping and immune phenotyping of tumor microenvironment

M Chaddha, H Rai, R Gupta, D Thakral - Frontiers in Genetics, 2023 - frontiersin.org
The circulating cell-free nucleic acids (ccfNAs) consist of a heterogenous cocktail of both
single (ssNA) and double-stranded (dsNA) nucleic acids. These ccfNAs are secreted into the …

Depletion‐assisted multiplexed cell‐free RNA sequencing reveals distinct human and microbial signatures in plasma versus extracellular vesicles

H Wang, Q Zhan, M Ning, H Guo… - Clinical and …, 2024 - Wiley Online Library
Abstract Background Cell‐free long RNAs in human plasma and extracellular vesicles (EVs)
have shown promise as biomarkers in liquid biopsy, despite their fragmented nature …

An investigation of plasma cell-free RNA for the detection of colorectal cancer: From transcriptome marker selection to targeted validation

EJ Northrop-Albrecht, CW Wu, CK Berger, WR Taylor… - Plos one, 2024 - journals.plos.org
Regular screening for colorectal cancer (CRC) is critical for early detection and long-term
survival. Despite the current screening options available and advancements in therapies …

Single cell and plasma RNA sequencing for RNA liquid biopsy for hepatocellular carcinoma

JSL Vong, L Ji, MMS Heung, SH Cheng… - Clinical …, 2021 - academic.oup.com
Background Human plasma contains RNA transcripts released by multiple cell types within
the body. Single-cell transcriptomic analysis allows the cellular origin of circulating RNA …

Cell types of origin in the cell free transcriptome in human health and disease

SK Vorperian, MN Moufarrej… - BioRxiv, 2021 - biorxiv.org
Liquid biopsies using cell-free RNA (cfRNA) can noninvasively measure dynamic
physiological changes throughout the body. While there is much effort in the liquid biopsy …