Single cell analyses of development in the modern era

AM Klein, B Treutlein - Development, 2019 - journals.biologists.com
Single cell analyses encompass multiple approaches that, we suggest, can be summarized
by two unifying goals: to explain the cellular composition of tissues; and to characterize the …

Understanding development and stem cells using single cell-based analyses of gene expression

P Kumar, Y Tan, P Cahan - Development, 2017 - journals.biologists.com
In recent years, genome-wide profiling approaches have begun to uncover the molecular
programs that drive developmental processes. In particular, technical advances that enable …

[HTML][HTML] Synergy of single-cell sequencing analyses and in vivo lineage-tracing approaches: A new opportunity for stem cell biology

Y Matsushita, ONO Wanida… - Biocell: official journal of …, 2022 - ncbi.nlm.nih.gov
Single-cell sequencing technologies have rapidly progressed in recent years, and been
applied to characterize stem cells in a number of organs. Somatic (postnatal) stem cells are …

Using single‐cell genomics to understand developmental processes and cell fate decisions

JA Griffiths, A Scialdone, JC Marioni - Molecular systems biology, 2018 - embopress.org
High‐throughput‐omics techniques have revolutionised biology, allowing for thorough and
unbiased characterisation of the molecular states of biological systems. However, cellular …

Single-cell transcriptional profiling: a window into embryonic cell-type specification

B Pijuan-Sala, C Guibentif, B Göttgens - Nature reviews Molecular cell …, 2018 - nature.com
During mammalian embryonic development, a single fertilized egg cell will proliferate and
differentiate into all the cell lineages and cell types that eventually form the adult organism …

Understanding embryonic development at single-cell resolution

M Jiang, X Xu, G Guo - Cell Regeneration, 2021 - Springer
A major goal of developmental biology is to understand the progression of embryonic cell
lineages from pluripotency to adulthood. During embryogenesis, cells proliferate and spread …

Challenges and emerging directions in single-cell analysis

GC Yuan, L Cai, M Elowitz, T Enver, G Fan, G Guo… - Genome biology, 2017 - Springer
Single-cell analysis is a rapidly evolving approach to characterize genome-scale molecular
information at the individual cell level. Development of single-cell technologies and …

Single-cell analysis of the transcriptome and its application in the characterization of stem cells and early embryos

N Liu, L Liu, X Pan - Cellular and molecular life sciences, 2014 - Springer
Cellular heterogeneity within a cell population is a common phenomenon in multicellular
organisms, tissues, cultured cells, and even FACS-sorted subpopulations. Important …

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

M Plass, J Solana, FA Wolf, S Ayoub, A Misios… - Science, 2018 - science.org
INTRODUCTION Understanding the differentiation of stem cells into the vast amount of cell
types that form the human body is a central problem of basic and medical science. The …

Single cell genomics and developmental biology: moving beyond the generation of cell type catalogues

MLN Ton, C Guibentif, B Göttgens - Current opinion in genetics & …, 2020 - Elsevier
Major developmental processes such as gastrulation and early embryogenesis rely on a
complex network of cell–cell interactions, chromatin remodeling, and transcriptional …