[HTML][HTML] A single-embryo, single-cell time-resolved model for mouse gastrulation

M Mittnenzweig, Y Mayshar, S Cheng, R Ben-Yair… - Cell, 2021 - cell.com
Mouse embryonic development is a canonical model system for studying mammalian cell
fate acquisition. Recently, single-cell atlases comprehensively charted embryonic …

Systematic reconstruction of cellular trajectories across mouse embryogenesis

C Qiu, J Cao, BK Martin, T Li, IC Welsh, S Srivatsan… - Nature …, 2022 - nature.com
Mammalian embryogenesis is characterized by rapid cellular proliferation and
diversification. Within a few weeks, a single-cell zygote gives rise to millions of cells …

[HTML][HTML] Single-cell landscape of transcriptional heterogeneity and cell fate decisions during mouse early gastrulation

H Mohammed, I Hernando-Herraez, A Savino… - Cell reports, 2017 - cell.com
The mouse inner cell mass (ICM) segregates into the epiblast and primitive endoderm (PrE)
lineages coincident with implantation of the embryo. The epiblast subsequently undergoes …

Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis

A Sampath Kumar, L Tian, A Bolondi, AA Hernández… - Nature Genetics, 2023 - nature.com
Spatiotemporal orchestration of gene expression is required for proper embryonic
development. The use of single-cell technologies has begun to provide improved resolution …

Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation

R Wang, X Yang, J Chen, L Zhang, JA Griffiths… - Nature …, 2023 - nature.com
Understanding of the molecular drivers of lineage diversification and tissue patterning
during primary germ layer development requires in-depth knowledge of the dynamic …

Decoding gene regulation in the mouse embryo using single-cell multi-omics

R Argelaguet, T Lohoff, JG Li, A Nakhuda, D Drage… - BioRxiv, 2022 - biorxiv.org
Following gastrulation, the three primary germ layers develop into the major organs in a
process known as organogenesis. Single-cell RNA sequencing has enabled the profiling of …

A 4D single-cell protein atlas of transcription factors delineates spatiotemporal patterning during embryogenesis

X Ma, Z Zhao, L Xiao, W Xu, Y Kou, Y Zhang, G Wu… - Nature …, 2021 - nature.com
Complex biological processes such as embryogenesis require precise coordination of cell
differentiation programs across both space and time. Using protein-fusion fluorescent …

An atlas of rabbit development as a model for single-cell comparative genomics

MLN Ton, D Keitley, B Theeuwes, C Guibentif… - Nature Cell …, 2023 - nature.com
Traditionally, the mouse has been the favoured vertebrate model for biomedical research,
due to its experimental and genetic tractability. However, non-rodent embryological studies …

3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages

D Murphy, E Salataj, DC Di Giammartino… - Nature Structural & …, 2024 - nature.com
Mammalian embryogenesis commences with two pivotal and binary cell fate decisions that
give rise to three essential lineages: the trophectoderm, the epiblast and the primitive …

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

JA Briggs, C Weinreb, DE Wagner, S Megason… - Science, 2018 - science.org
INTRODUCTION Metazoan development represents a big jump in complexity compared
with unicellular life in two aspects: cell-type differentiation and cell spatial organization. In …