Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

B Bloemen, M Gand, K Vanneste, K Marchal… - Scientific Reports, 2023 - nature.com
Rapid, accurate and comprehensive diagnostics are essential for outbreak prevention and
pathogen surveillance. Real-time, on-site metagenomics on miniaturized devices, such as …

Nanopore-based fingerprint immunoassay based on rolling circle amplification and DNA fragmentation

X Kang, C Wu, MA Alibakhshi, X Liu, L Yu, DR Walt… - ACS …, 2023 - ACS Publications
In recent years, nanopore-based sequencers have become robust tools with unique
advantages for genomics applications. However, progress toward applying nanopores as …

Nanopore sequencing in agricultural and food applications

JR Shearman, S Tangphatsornruang - Handbook of Nanotechnology …, 2021 - Elsevier
Biotechnology has greatly contributed to the improvement of productivity and quality of
agricultural and food products. A particularly powerful approach in molecular tools has been …

Oxford Nanopore MinION sequencing and genome assembly

H Lu, F Giordano, Z Ning - Genomics, Proteomics and …, 2016 - academic.oup.com
The revolution of genome sequencing is continuing after the successful second-generation
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …

Microchip‐based forensic short tandem repeat genotyping

YT Kim, HY Heo, SH Oh, SH Lee, DH Kim… - …, 2015 - Wiley Online Library
Micro total analysis system (μTAS) or lab‐on‐a‐chip (LOC) technology has advanced over
decades, and the high performance for chemical and biological analysis has been well …

Nanopore sequencing: a rapid solution for infectious disease epidemics

Y Cao, J Li, X Chu, H Liu, W Liu, D Liu - Science China Life Sciences, 2019 - Springer
Emerging and re-emerging infectious diseases have given rise to a large number of human
infections, morbidity, and heavy economic burden, including the Middle East respiratory …

Highly multiplexed detection of microRNAs, proteins and small molecules using barcoded molecular probes and nanopore sequencing

C Koch, B Reilly-O'Donnell, R Gutierrez, C Lucarelli… - bioRxiv, 2022 - biorxiv.org
Currently, most blood tests in a clinical setting only investigate a handful of markers. A low-
cost, rapid, and highly multiplexed platform for the quantitative detection of blood biomarkers …

[PDF][PDF] SURVEY AND SUMMARY Maximizing the potential of genomic and transcriptomic studies by nanopore sequencing

D Meyer, W Gottsch, J Spannenberg, P Bohn, B Stieber… - storage.prod.researchhub.com
Nucleic acid sequencing is the process of identifying the sequence of DNA or RNA, with
DNA used for genomes and RNA for transcriptomes. Deciphering this information has the …

Rapid multiplex small DNA sequencing on the MinION nanopore sequencing platform

S Wei, ZR Weiss, Z Williams - G3: Genes, Genomes, Genetics, 2018 - academic.oup.com
Real-time sequencing of short DNA reads has a wide variety of clinical and research
applications including screening for mutations, target sequences and aneuploidy. We …

[HTML][HTML] Long-read nanopore sequencing validated for human leukocyte antigen class I typing in routine diagnostics

BM Matern, TI Olieslagers, M Groeneweg… - The Journal of Molecular …, 2020 - Elsevier
Matching of human leukocyte antigen (HLA) gene polymorphisms by high-resolution DNA
sequence analysis is the gold standard for determining compatibility between patient and …