High-performance iterative electron tomography reconstruction with long-object compensation using graphics processing units (GPUs)

W Xu, F Xu, M Jones, B Keszthelyi, J Sedat… - Journal of structural …, 2010 - Elsevier
Iterative reconstruction algorithms pose tremendous computational challenges for 3D
Electron Tomography (ET). Similar to X-ray Computed Tomography (CT), graphics …

Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs)

WJ Palenstijn, KJ Batenburg, J Sijbers - Journal of structural biology, 2011 - Elsevier
Iterative reconstruction algorithms are becoming increasingly important in electron
tomography of biological samples. These algorithms, however, impose major computational …

High-performance electron tomography of complex biological specimens

JJ Fernández, AF Lawrence, J Roca, I Garcı́a… - Journal of structural …, 2002 - Elsevier
We have evaluated reconstruction methods using smooth basis functions in the electron
tomography of complex biological specimens. In particular, we have investigated series …

Radiation dose reduction and image enhancement in biological imaging through equally-sloped tomography

E Lee, BP Fahimian, CV Iancu, C Suloway… - Journal of structural …, 2008 - Elsevier
Electron tomography is currently the highest resolution imaging modality available to study
the 3D structures of pleomorphic macromolecular assemblies, viruses, organelles and cells …

[HTML][HTML] FIRT: Filtered iterative reconstruction technique with information restoration

Y Chen, Y Zhang, K Zhang, Y Deng, S Wang… - Journal of structural …, 2016 - Elsevier
Electron tomography (ET) combining subsequent sub-volume averaging has been
becoming a unique way to study the in situ 3D structures of macromolecular complexes …

Autom: a novel automatic platform for electron tomography reconstruction

R Han, X Wan, Z Wang, Y Hao, J Zhang, Y Chen… - Journal of structural …, 2017 - Elsevier
We have developed a software package towards automatic electron tomography (ET):
Automatic Tomography (AuTom). The presented package has the following characteristics …

[HTML][HTML] A simple Fourier filter for suppression of the missing wedge ray artefacts in single-axis electron tomographic reconstructions

L Kováčik, S Kerïeche, JL Höög, P Jůda… - Journal of structural …, 2014 - Elsevier
The limited specimen tilting range that is typically available in electron tomography gives
rise to a region in the Fourier space of the reconstructed object where experimental data are …

Matrix implementation of simultaneous iterative reconstruction technique (SIRT) on GPUs

F Vázquez, EM Garzón, JJ Fernández - The Computer Journal, 2011 - ieeexplore.ieee.org
Electron tomography (ET) is an important technique in biosciences that is providing new
insights into the cellular ultrastructure. Iterative reconstruction methods have been shown to …

The ASTRA Toolbox: A platform for advanced algorithm development in electron tomography

W Van Aarle, WJ Palenstijn, J De Beenhouwer… - Ultramicroscopy, 2015 - Elsevier
We present the ASTRA Toolbox as an open platform for 3D image reconstruction in
tomography. Most of the software tools that are currently used in electron tomography offer …

A resolution criterion for electron tomography based on cross-validation

G Cardone, K Grünewald, AC Steven - Journal of structural biology, 2005 - Elsevier
Despite much progress in electron tomography, quantitative assessment of resolution has
remained a problematic issue. The criteria that are used in single particle analysis, based on …