QuickNAT: A fully convolutional network for quick and accurate segmentation of neuroanatomy

AG Roy, S Conjeti, N Navab, C Wachinger… - NeuroImage, 2019 - Elsevier
Whole brain segmentation from structural magnetic resonance imaging (MRI) is a
prerequisite for most morphological analyses, but is computationally intense and can …

DeepNAT: Deep convolutional neural network for segmenting neuroanatomy

C Wachinger, M Reuter, T Klein - NeuroImage, 2018 - Elsevier
We introduce DeepNAT, a 3D Deep convolutional neural network for the automatic
segmentation of NeuroAnaTomy in T1-weighted magnetic resonance images. DeepNAT is …

Deep learning for brain MRI segmentation: state of the art and future directions

Z Akkus, A Galimzianova, A Hoogi, DL Rubin… - Journal of digital …, 2017 - Springer
Quantitative analysis of brain MRI is routine for many neurological diseases and conditions
and relies on accurate segmentation of structures of interest. Deep learning-based …

Fastsurfer-a fast and accurate deep learning based neuroimaging pipeline

L Henschel, S Conjeti, S Estrada, K Diers, B Fischl… - NeuroImage, 2020 - Elsevier
Traditional neuroimage analysis pipelines involve computationally intensive, time-
consuming optimization steps, and thus, do not scale well to large cohort studies with …

A 3D spatially weighted network for segmentation of brain tissue from MRI

L Sun, W Ma, X Ding, Y Huang… - IEEE transactions on …, 2019 - ieeexplore.ieee.org
The segmentation of brain tissue in MRI is valuable for extracting brain structure to aid
diagnosis, treatment and tracking the progression of different neurologic diseases. Medical …

Unsupervised brain lesion segmentation from MRI using a convolutional autoencoder

HE Atlason, A Love, S Sigurdsson… - Medical Imaging …, 2019 - spiedigitallibrary.org
Lesions that appear hyperintense in both Fluid Attenuated Inversion Recovery (FLAIR) and
T2-weighted magnetic resonance images (MRIs) of the human brain are common in the …

M3Net: A multi-model, multi-size, and multi-view deep neural network for brain magnetic resonance image segmentation

J Wei, Y Xia, Y Zhang - Pattern Recognition, 2019 - Elsevier
Segmentation of the brain into gray matter, white matter, and cerebrospinal fluid (CSF) using
magnetic resonance (MR) imaging plays a fundamental role in neuroimaging research and …

3D dense connectivity network with atrous convolutional feature pyramid for brain tumor segmentation in magnetic resonance imaging of human heads

Z Zhou, Z He, M Shi, J Du, D Chen - Computers in Biology and Medicine, 2020 - Elsevier
The existing deep convolutional neural networks (DCNNs) based methods have achieved
significant progress regarding automatic glioma segmentation in magnetic resonance …

Deep CNN ensembles and suggestive annotations for infant brain MRI segmentation

J Dolz, C Desrosiers, L Wang, J Yuan, D Shen… - … Medical Imaging and …, 2020 - Elsevier
Precise 3D segmentation of infant brain tissues is an essential step towards comprehensive
volumetric studies and quantitative analysis of early brain development. However …

A lifelong learning approach to brain MR segmentation across scanners and protocols

N Karani, K Chaitanya, C Baumgartner… - … conference on medical …, 2018 - Springer
Convolutional neural networks (CNNs) have shown promising results on several
segmentation tasks in magnetic resonance (MR) images. However, the accuracy of CNNs …