A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys

BB Lake, S Chen, M Hoshi, N Plongthongkum… - Nature …, 2019 - nature.com
Defining cellular and molecular identities within the kidney is necessary to understand its
organization and function in health and disease. Here we demonstrate a reproducible …

Single-cell RNA sequencing reveals the mesangial identity and species diversity of glomerular cell transcriptomes

B He, P Chen, S Zambrano, D Dabaghie, Y Hu… - Nature …, 2021 - nature.com
Molecular characterization of the individual cell types in human kidney as well as model
organisms are critical in defining organ function and understanding translational aspects of …

Deep sequencing in microdissected renal tubules identifies nephron segment–specific transcriptomes

JW Lee, CL Chou, MA Knepper - Journal of the American Society …, 2015 - journals.lww.com
The function of each renal tubule segment depends on the genes expressed therein. High-
throughput methods used for global profiling of gene expression in unique cell types have …

Targeted single-cell RNA-seq identifies minority cell types of kidney distal nephron

L Chen, CL Chou, MA Knepper - Journal of the American Society …, 2021 - journals.lww.com
Background Proximal tubule cells dominate the kidney parenchyma numerically, although
less abundant cell types of the distal nephron have disproportionate roles in water and …

A single-cell transcriptome atlas of the mouse glomerulus

N Karaiskos, M Rahmatollahi… - Journal of the …, 2018 - journals.lww.com
Background Three different cell types constitute the glomerular filter: mesangial cells,
endothelial cells, and podocytes. However, to what extent cellular heterogeneity exists …

[HTML][HTML] Representation and relative abundance of cell-type selective markers in whole-kidney RNA-Seq data

JZ Clark, L Chen, CL Chou, HJ Jung, JW Lee… - Kidney international, 2019 - Elsevier
Bulk-tissue RNA-Seq is increasingly being used in the study of physiological and
pathophysiological processes in the kidney; however, the presence of multiple cell types in …

Single-cell transcriptome profiling of the kidney glomerulus identifies key cell types and reactions to injury

JJ Chung, L Goldstein, YJJ Chen, J Lee… - Journal of the …, 2020 - journals.lww.com
Background The glomerulus is a specialized capillary bed that is involved in urine
production and BP control. Glomerular injury is a major cause of CKD, which is epidemic …

Advantages of single-nucleus over single-cell RNA sequencing of adult kidney: rare cell types and novel cell states revealed in fibrosis

H Wu, Y Kirita, EL Donnelly… - Journal of the American …, 2019 - journals.lww.com
Background A challenge for single-cell genomic studies in kidney and other solid tissues is
generating a high-quality single-cell suspension that contains rare or difficult-to-dissociate …

The single-cell transcriptomic landscape of early human diabetic nephropathy

PC Wilson, H Wu, Y Kirita, K Uchimura… - Proceedings of the …, 2019 - National Acad Sciences
Diabetic nephropathy is characterized by damage to both the glomerulus and
tubulointerstitium, but relatively little is known about accompanying cell-specific changes in …

[HTML][HTML] The promise of single-cell RNA sequencing for kidney disease investigation

H Wu, BD Humphreys - Kidney international, 2017 - Elsevier
Recent techniques for single-cell RNA sequencing (scRNA-seq) at high throughput are
leading to profound new discoveries in biology. The ability to generate vast amounts of …