Three-dimensional genome architecture: players and mechanisms

A Pombo, N Dillon - Nature reviews Molecular cell biology, 2015 - nature.com
The different cell types of an organism share the same DNA, but during cell differentiation
their genomes undergo diverse structural and organizational changes that affect gene …

Organization and function of the 3D genome

B Bonev, G Cavalli - Nature Reviews Genetics, 2016 - nature.com
Understanding how chromatin is organized within the nucleus and how this 3D architecture
influences gene regulation, cell fate decisions and evolution are major questions in cell …

Architectural proteins: regulators of 3D genome organization in cell fate

E Gómez-Díaz, VG Corces - Trends in cell biology, 2014 - cell.com
The relation between alterations in chromatin structure and changes in gene expression
during cell differentiation has served as a paradigm to understand the link between genome …

The three-dimensional organization of mammalian genomes

M Yu, B Ren - Annual review of cell and developmental biology, 2017 - annualreviews.org
Animal development depends on not only the linear genome sequence that embeds millions
of cis-regulatory elements, but also the three-dimensional (3D) chromatin architecture that …

The hierarchy of the 3D genome

JH Gibcus, J Dekker - Molecular cell, 2013 - cell.com
Mammalian genomes encode genetic information in their linear sequence, but appropriate
expression of their genes requires chromosomes to fold into complex three-dimensional …

[HTML][HTML] The self-organizing genome: principles of genome architecture and function

T Misteli - Cell, 2020 - cell.com
Genomes have complex three-dimensional architectures. The recent convergence of
genetic, biochemical, biophysical, and cell biological methods has uncovered several …

The three-dimensional genome: principles and roles of long-distance interactions

MJ Rowley, VG Corces - Current opinion in cell biology, 2016 - Elsevier
The linear sequence of eukaryotic genomes is arranged in a specific manner within the
three-dimensional nuclear space. Interactions between distant sites partition the genome …

Long-range chromatin interactions

J Dekker, T Misteli - Cold Spring Harbor perspectives in …, 2015 - cshperspectives.cshlp.org
To accommodate genomes in the limited space of the cell nucleus and ensure the correct
execution of gene expression programs, genomes are packaged in complex fashion in the …

Multiplexed imaging of nucleome architectures in single cells of mammalian tissue

M Liu, Y Lu, B Yang, Y Chen, JSD Radda, M Hu… - Nature …, 2020 - nature.com
The three-dimensional architecture of the genome affects genomic functions. Multiple
genome architectures at different length scales, including chromatin loops, domains …

Understanding the regulatory and transcriptional complexity of the genome through structure

TR Mercer, JS Mattick - Genome research, 2013 - genome.cshlp.org
An expansive functionality and complexity has been ascribed to the majority of the human
genome that was unanticipated at the outset of the draft sequence and assembly a decade …