Morel: Multi-omics relational learning

A Hasanzadeh, E Hajiramezanali, N Duffield… - arXiv preprint arXiv …, 2022 - arxiv.org
Multi-omics data analysis has the potential to discover hidden molecular interactions,
revealing potential regulatory and/or signal transduction pathways for cellular processes of …

BayReL: Bayesian relational learning for multi-omics data integration

E Hajiramezanali, A Hasanzadeh… - Advances in …, 2020 - proceedings.neurips.cc
High-throughput molecular profiling technologies have produced high-dimensional multi-
omics data, enabling systematic understanding of living systems at the genome scale …

Representation Learning for Multi-omics Data with Heterogeneous Gene Regulatory Network

X Liu, X Xu, X Xu, X Li, G Xie - 2021 IEEE International …, 2021 - ieeexplore.ieee.org
To derive expressive representations from high-dimensional and sparse multi-omics
samples, there has been existing research attempting to incorporate Gene Regulatory …

Collective relational inference for learning heterogeneous interactions

Z Han, O Fink, DS Kammer - Nature Communications, 2024 - nature.com
Interacting systems are ubiquitous in nature and engineering, ranging from particle
dynamics in physics to functionally connected brain regions. Revealing interaction laws is of …

Relation prediction as an auxiliary training objective for improving multi-relational graph representations

Y Chen, P Minervini, S Riedel, P Stenetorp - arXiv preprint arXiv …, 2021 - arxiv.org
Learning good representations on multi-relational graphs is essential to knowledge base
completion (KBC). In this paper, we propose a new self-supervised training objective for …

GREMI: an Explainable Multi-omics Integration Framework for Enhanced Disease Prediction and Module Identification

H Liang, H Luo, Z Sang, M Jia, X Jiang, Z Wang, X Yao… - bioRxiv, 2023 - biorxiv.org
Multi-omics integration has demonstrated promising performance in complex disease
prediction. However, existing research typically focuses on maximizing prediction accuracy …

Multiview learning for understanding functional multiomics

ND Nguyen, D Wang - PLoS computational biology, 2020 - journals.plos.org
The molecular mechanisms and functions in complex biological systems currently remain
elusive. Recent high-throughput techniques, such as next-generation sequencing, have …

[PDF][PDF] Simulating Human Associations with Linked Data

J Hees - 2018 - kluedo.ub.rptu.de
In recent years, enormous progress has been made in the field of Artificial Intelligence (AI).
Especially the introduction of Deep Learning and end-to-end learning, the availability of …

mg2vec: Learning relationship-preserving heterogeneous graph representations via metagraph embedding

W Zhang, Y Fang, Z Liu, M Wu… - IEEE Transactions on …, 2020 - ieeexplore.ieee.org
Given that heterogeneous information networks (HIN) encompass nodes and edges
belonging to different semantic types, they can model complex data in real-world scenarios …

[PDF][PDF] Structure-informed graph auto-encoder for relational inference and simulation

Y Li, C Meng, C Shahabi, Y Liu - ICML Workshop on Learning …, 2019 - liyaguang.github.io
A variety of real-world applications require the modeling and the simulation of dynamical
systems, eg, physics, transportation and climate. With the increase of complexity, it becomes …