Studying lineage decision-making in vitro: emerging concepts and novel tools

S Semrau, A van Oudenaarden - Annual review of cell and …, 2015 - annualreviews.org
Correct and timely lineage decisions are critical for normal embryonic development and
homeostasis of adult tissues. Therefore, the search for fundamental principles that underlie …

Making lineage decisions with biological noise: Lessons from the early mouse embryo

CS Simon, AK Hadjantonakis… - Wiley Interdisciplinary …, 2018 - Wiley Online Library
Understanding how individual cells make fate decisions that lead to the faithful formation
and homeostatic maintenance of tissues is a fundamental goal of contemporary …

[PDF][PDF] Single-cell multi-omics and lineage tracing to dissect cell fate decision-making

L Haghverdi, LS Ludwig - Stem Cell Reports, 2023 - cell.com
The concept of cell fate relates to the future identity of a cell, and its daughters, which is
obtained via cell differentiation and division. Understanding, predicting, and manipulating …

[HTML][HTML] Transcriptional and epigenetic dynamics during specification of human embryonic stem cells

CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey… - Cell, 2013 - cell.com
Differentiation of human embryonic stem cells (hESCs) provides a unique opportunity to
study the regulatory mechanisms that facilitate cellular transitions in a human context. To …

[HTML][HTML] Single-cell technologies: a new lens into epigenetic regulation in development

A Bolondi, H Kretzmer, A Meissner - Current Opinion in Genetics & …, 2022 - Elsevier
Highlights•Single-cell atlases of mouse embryogenesis reveal epigenetic regulator
dynamics in early development.•Genetic perturbation in combination with single-cell …

[HTML][HTML] Lineage choice and differentiation in mouse embryos and embryonic stem cells

DAF Loebel, CM Watson, RA De Young, PPL Tam - Developmental biology, 2003 - Elsevier
The use of embryonic stem (ES) cells for generating healthy tissues has the potential to
revolutionize therapies for human disease or injury, for which there are currently no effective …

Transcriptional mechanisms of cell fate decisions revealed by single cell expression profiling

V Moignard, B Göttgens - Bioessays, 2014 - Wiley Online Library
Transcriptional networks regulate cell fate decisions, which occur at the level of individual
cells. However, much of what we know about their structure and function comes from studies …

Using single‐cell genomics to understand developmental processes and cell fate decisions

JA Griffiths, A Scialdone, JC Marioni - Molecular systems biology, 2018 - embopress.org
High‐throughput‐omics techniques have revolutionised biology, allowing for thorough and
unbiased characterisation of the molecular states of biological systems. However, cellular …

Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states

S Jang, S Choubey, L Furchtgott, LN Zou, A Doyle… - elife, 2017 - elifesciences.org
The complexity of gene regulatory networks that lead multipotent cells to acquire different
cell fates makes a quantitative understanding of differentiation challenging. Using a …

Creating lineage trajectory maps via integration of single‐cell RNA‐sequencing and lineage tracing: integrating transgenic lineage tracing and single‐cell RNA …

RB Fletcher, D Das, J Ngai - Bioessays, 2018 - Wiley Online Library
Mapping the paths that stem and progenitor cells take en route to differentiate and
elucidating the underlying molecular controls are key goals in developmental and stem cell …