Deep learning methods for molecular representation and property prediction

Z Li, M Jiang, S Wang, S Zhang - Drug Discovery Today, 2022 - Elsevier
Highlights•The deep learning method could effectively represent the molecular structure and
predict molecular property through diversified models.•One, two, and three-dimensional …

Generative deep learning for targeted compound design

T Sousa, J Correia, V Pereira… - Journal of chemical …, 2021 - ACS Publications
In the past few years, de novo molecular design has increasingly been using generative
models from the emergent field of Deep Learning, proposing novel compounds that are …

COSMO-CAMD: A framework for optimization-based computer-aided molecular design using COSMO-RS

J Scheffczyk, L Fleitmann, A Schwarz, M Lampe… - Chemical Engineering …, 2017 - Elsevier
Molecular design approaches typically rely on simplified thermodynamic property prediction
models to be computationally tractable. In addition, the simplified prediction methods have to …

Autonomous molecular design: then and now

T Dimitrov, C Kreisbeck, JS Becker… - … applied materials & …, 2019 - ACS Publications
The success of deep machine learning in processing of large amounts of data, for example,
in image or voice recognition and generation, raises the possibilities that these tools can …

Automated de novo molecular design by hybrid machine intelligence and rule-driven chemical synthesis

A Button, D Merk, JA Hiss, G Schneider - Nature machine intelligence, 2019 - nature.com
Chemical creativity in the design of new synthetic chemical entities (NCEs) with drug-like
properties has been the domain of medicinal chemists. Here, we explore the capability of a …

DeepDelta: predicting ADMET improvements of molecular derivatives with deep learning

Z Fralish, A Chen, P Skaluba, D Reker - Journal of Cheminformatics, 2023 - Springer
Established molecular machine learning models process individual molecules as inputs to
predict their biological, chemical, or physical properties. However, such algorithms require …

Modern machine learning for tackling inverse problems in chemistry: molecular design to realization

B Sridharan, M Goel, UD Priyakumar - Chemical Communications, 2022 - pubs.rsc.org
The discovery of new molecules and materials helps expand the horizons of novel and
innovative real-life applications. In pursuit of finding molecules with desired properties …

Deep learning for computational chemistry

GB Goh, NO Hodas, A Vishnu - Journal of computational …, 2017 - Wiley Online Library
The rise and fall of artificial neural networks is well documented in the scientific literature of
both computer science and computational chemistry. Yet almost two decades later, we are …

De novo molecule design by translating from reduced graphs to SMILES

P Pogány, N Arad, S Genway… - Journal of chemical …, 2018 - ACS Publications
A key component of automated molecular design is the generation of compound ideas for
subsequent filtering and assessment. Recently deep learning approaches have been …

When machine learning meets molecular synthesis

JCA Oliveira, J Frey, SQ Zhang, LC Xu, X Li, SW Li… - Trends in Chemistry, 2022 - cell.com
The recent synergy of machine learning (ML) with molecular synthesis has emerged as an
increasingly powerful platform in organic synthesis and catalysis. This merger has set the …