Optimization‐based framework for computer‐aided molecular design

AP Samudra, NV Sahinidis - AIChE Journal, 2013 - Wiley Online Library
A new framework to automate, augment, and accelerate steps in computer‐aided molecular
design is presented. The problem is tackled in three stages:(1) composition design,(2) …

Deep generative models for ligand‐based de novo design applied to multi‐parametric optimization

Q Perron, O Mirguet, H Tajmouati… - Journal of …, 2022 - Wiley Online Library
Multi‐parameter optimization (MPO) is a major challenge in new chemical entity (NCE) drug
discovery. Recently, promising results were reported for deep learning generative models …

[HTML][HTML] Quantum computing for chemical and biomolecular product design

MP Andersson, MN Jones, KV Mikkelsen, F You… - Current Opinion in …, 2022 - Elsevier
Highlights•Quantum computing and its use for computer-aided product design is discussed
and perspectives for several types of problems are provided.•Hybrid QC methods are likely …

Generative models for automatic chemical design

D Schwalbe-Koda, R Gómez-Bombarelli - Machine Learning Meets …, 2020 - Springer
Materials discovery is decisive for tackling urgent challenges related to energy, the
environment, health care, and many others. In chemistry, conventional methodologies for …

Computer-aided molecular design: An introduction and review of tools, applications, and solution techniques

ND Austin, NV Sahinidis, DW Trahan - Chemical Engineering Research …, 2016 - Elsevier
This article provides an introduction to and review of the field of computer-aided molecular
design (CAMD). It is intended to be approachable for the absolute beginner as well as useful …

Deep learning for molecular generation

Y Xu, K Lin, S Wang, L Wang, C Cai… - Future medicinal …, 2019 - Taylor & Francis
De novo drug design aims to generate novel chemical compounds with desirable chemical
and pharmacological properties from scratch using computer-based methods. Recently …

Advances of machine learning in molecular modeling and simulation

M Haghighatlari, J Hachmann - Current Opinion in Chemical Engineering, 2019 - Elsevier
In this review, we highlight recent developments in the application of machine learning for
molecular modeling and simulation. After giving a brief overview of the foundations …

Molecular machine learning: the future of synthetic chemistry?

PM Pflüger, F Glorius - Angewandte Chemie International …, 2020 - Wiley Online Library
During the last decade, modern machine learning has found its way into synthetic chemistry.
Some long‐standing challenges, such as computer‐aided synthesis planning (CASP), have …

Designing catalysts with deep generative models and computational data. A case study for Suzuki cross coupling reactions

O Schilter, A Vaucher, P Schwaller, T Laino - Digital discovery, 2023 - pubs.rsc.org
The need for more efficient catalytic processes is ever-growing, and so are the costs
associated with experimentally searching chemical space to find new promising catalysts …

Comparison of structure-and ligand-based scoring functions for deep generative models: a GPCR case study

M Thomas, RT Smith, NM O'Boyle, C de Graaf… - Journal of …, 2021 - Springer
Deep generative models have shown the ability to devise both valid and novel chemistry,
which could significantly accelerate the identification of bioactive compounds. Many current …